View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17086_low_2 (Length: 303)
Name: NF17086_low_2
Description: NF17086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17086_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 5440731 - 5440459
Alignment:
| Q |
17 |
aattttaaaattctcttcact-gtagattcttgctactatttgaaatccttcaaaaaataatattaagttattatgttgtatatctaccattaatcatgt |
115 |
Q |
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| T |
5440731 |
aattttaaaattctcttcattcgtagattcttgctactatttgaaatccttcaaaaaataatattaagttattatgttgtatatctaccattagtcatgt |
5440632 |
T |
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| Q |
116 |
tgtccatatcactattggttttatttatttatgttatgcaaaaaatgaaggcatcaatggaaattcagcttgtaaaagatcatggtacaacaacgtttga |
215 |
Q |
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| T |
5440631 |
tgtccatatcactattggttttatttatttatgttatgcaaaaaatgaaggcatcaatggaaattcagcttgtaaaagatcatggtacaacaatgtttga |
5440532 |
T |
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| Q |
216 |
atgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatattttccacctatg |
288 |
Q |
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| T |
5440531 |
atgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatcttttccacctatg |
5440459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 3857549 - 3857627
Alignment:
| Q |
210 |
gtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatattttccacctatg |
288 |
Q |
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| T |
3857549 |
gtttgaatgtacaaatattgagaagacagccattcagtcatttgagtatgaggatgcaatcaaatattttcaacctatg |
3857627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 3866306 - 3866384
Alignment:
| Q |
210 |
gtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatattttccacctatg |
288 |
Q |
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|||||||||||||||||| |||||||||| || | ||||||| || |||| |||||||||||||||||| ||||||| |
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| T |
3866306 |
gtttgaatgtacaaatattgagaagacagccattcagtcatttgagtatgaggatgcaatcaaatattttcaacctatg |
3866384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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