View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_high_12 (Length: 434)

Name: NF17087_high_12
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_high_12
NF17087_high_12
[»] chr7 (10 HSPs)
chr7 (104-419)||(45270801-45271113)
chr7 (104-419)||(45282574-45282887)
chr7 (104-419)||(45274331-45274646)
chr7 (104-419)||(45293959-45294275)
chr7 (104-419)||(45302919-45303235)
chr7 (20-90)||(45293811-45293881)
chr7 (20-90)||(45302771-45302841)
chr7 (20-90)||(45270701-45270771)
chr7 (20-85)||(45282471-45282536)
chr7 (20-86)||(45274228-45274294)
[»] chr1 (1 HSPs)
chr1 (372-417)||(38583244-38583289)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 104 - 419
Target Start/End: Original strand, 45270801 - 45271113
Alignment:
Q  104 cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat 203  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45270801 cttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat 45270900  T
Q  204 taaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccag 303  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||| ||||| |||| |||||||| | |||||||||||  |||||||||| |||||||    
T  45270901 taaataaaataaaa--gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttctaccag 45270997  T
Q  304 tgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat 403  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45270998 tgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat 45271097  T
Q  404 aacatatctgcctttg 419  Q
    |||||||||| |||||    
T  45271098 aacatatctgtctttg 45271113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 104 - 419
Target Start/End: Original strand, 45282574 - 45282887
Alignment:
Q  104 cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat 203  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||||| || | |||||||    
T  45282574 cttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataag-taaataattaat 45282671  T
Q  204 taaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccag 303  Q
    ||||||||||||||||| |||||||||| |||| ||||||| ||||| |||| |||  | | |    | |||  ||| ||      | |||| |||||||    
T  45282672 taaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccag 45282771  T
Q  304 tgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat 403  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45282772 tgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagat 45282871  T
Q  404 aacatatctgcctttg 419  Q
    ||||||||||||||||    
T  45282872 aacatatctgcctttg 45282887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 104 - 419
Target Start/End: Original strand, 45274331 - 45274646
Alignment:
Q  104 cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaat 203  Q
    |||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||| ||||  || |||||| |||||| |||||||||| |||||||||    
T  45274331 cttttcaatgcgagtta-tgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaat 45274429  T
Q  204 taaataaaataaaaaa-gctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactacca 302  Q
     ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| |||  | | |    | |||||||||||      |||||| |||||     
T  45274430 caaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccg 45274529  T
Q  303 gtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtaga 402  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  45274530 gtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtaga 45274629  T
Q  403 taacatatctgcctttg 419  Q
    ||| ||| |||||||||    
T  45274630 taaaatacctgcctttg 45274646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 104 - 419
Target Start/End: Original strand, 45293959 - 45294275
Alignment:
Q  104 cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataaggtacacaatta 201  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||  ||| || ||||||||||||||||||||||||     
T  45293959 cttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt 45294057  T
Q  202 attaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactacc 301  Q
    ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| |||  | | |    | |||  ||| ||      |||||| || ||    
T  45294058 attaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttcc 45294157  T
Q  302 agtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtag 401  Q
     || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||    
T  45294158 ggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtag 45294257  T
Q  402 ataacatatctgcctttg 419  Q
    |||  |||||||||||||    
T  45294258 atagtatatctgcctttg 45294275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 104 - 419
Target Start/End: Original strand, 45302919 - 45303235
Alignment:
Q  104 cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataaggtacacaatta 201  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||  ||| || ||||||||||||||||||||||||     
T  45302919 cttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt 45303017  T
Q  202 attaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactacc 301  Q
    ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| |||  | | |    | |||  ||| ||      |||||| || ||    
T  45303018 attaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttcc 45303117  T
Q  302 agtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtag 401  Q
     || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||    
T  45303118 ggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtag 45303217  T
Q  402 ataacatatctgcctttg 419  Q
    |||  |||||||||||||    
T  45303218 atagtatatctgcctttg 45303235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 45293811 - 45293881
Alignment:
Q  20 caatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggc 90  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45293811 caatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggc 45293881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 45302771 - 45302841
Alignment:
Q  20 caatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggc 90  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45302771 caatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggc 45302841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 45270701 - 45270771
Alignment:
Q  20 caatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggc 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  45270701 caatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttctataacaccggc 45270771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 45282471 - 45282536
Alignment:
Q  20 caatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcaca 85  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  45282471 caatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcaca 45282536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 45274228 - 45274294
Alignment:
Q  20 caatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacac 86  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  45274228 caatgaaccctattgcggtgttggctgcacgcatggataatcaattaattagtaatttcgatcacac 45274294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
Q  372 tattcgtcatagacaccggccttaacgtagataacatatctgcctt 417  Q
    ||||||||||||||||| ||||| |||||||| |||||||| ||||    
T  38583244 tattcgtcatagacaccagccttgacgtagatgacatatctacctt 38583289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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