View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_15 (Length: 422)
Name: NF17087_high_15
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 399
Target Start/End: Complemental strand, 42998828 - 42998431
Alignment:
| Q |
2 |
agttaaagatgtgtttgtcttagctaaaatataagttgtttcattgatttctaacaaacttaacatgaaagatattaaaattaaagaaaaataaatatct |
101 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42998828 |
agttaaagatgtgtttgtcttagttaaaatataagttgttttattgatttctaacaaactagacatgaaagatattaaaattaaagaaaaataaatatct |
42998729 |
T |
|
| Q |
102 |
acaaccatctaatatgacatcgaattctaatacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaaatccacatattct |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42998728 |
acaaccatctaatatgacatcgaattctaagacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaaatccacatattct |
42998629 |
T |
|
| Q |
202 |
acttgaagatcacgcacccacaacaaagtgtgagtaagagtctaagaagcttcatttgtatcgtcgaagcatggaggtgagaactattttattttaacaa |
301 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42998628 |
acttgaagatcacgcacccacaacaaagtgtaagaaagagtctaagaagcttcacttgtatcgtcgaagcggagaggtgagaactattttattttaacaa |
42998529 |
T |
|
| Q |
302 |
aaacaaattaactattatcatccctaatacaaatatcaattctcacctagtcaaaataatacttctcttccatatgtgaacatcggtttccaagcaga |
399 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42998528 |
aaacaaattaactattatcatccctaatacaaataccaattctcacctagtcaaaataatacttctcttccatatgtgaacatcggtttccaagcaga |
42998431 |
T |
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