View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_high_17 (Length: 407)
Name: NF17087_high_17
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_17 |
 | |
|
| [»] scaffold1195 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 18)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15489643 - 15489878
Alignment:
| Q |
1 |
atgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgcggaagaaaatacagattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15489643 |
atgggggagcgcgatagaaacatcattatcatgaaaaattgaagatagagcacaaa-gcgaggaaatttaataagaatttgcggaagaaaatacagattg |
15489741 |
T |
|
| Q |
101 |
tagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactaattgtaatatgaatattatgc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
15489742 |
tagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgattgttatatgaatattatgc |
15489841 |
T |
|
| Q |
201 |
atgagttcattcagtattgaaatcaatattgtaaaat |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15489842 |
atgagttcattcaatattgaaatcaatattgtaaaat |
15489878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15557684 - 15557919
Alignment:
| Q |
1 |
atgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgcggaagaaaatacagattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15557684 |
atgggggagcgcgatagaaacatcattatcatgaaaaattgaagatagagcacaaa-gcgaggaaatttaataagaatttgcggaagaaaatacagattg |
15557782 |
T |
|
| Q |
101 |
tagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactaattgtaatatgaatattatgc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
15557783 |
tagaaaaactctcaattagtaaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaactgattgttatatgaatattatgc |
15557882 |
T |
|
| Q |
201 |
atgagttcattcagtattgaaatcaatattgtaaaat |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15557883 |
atgagttcattcaatattgaaatcaatattgtaaaat |
15557919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 15431248 - 15431418
Alignment:
| Q |
1 |
atgggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaattttaataagaatttgcggaagaaaatacagattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
15431248 |
atgggggagcgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaagagaggaaatttcttaagaatttgcggaagaaaatacagattg |
15431347 |
T |
|
| Q |
101 |
tagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15431348 |
tagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgt |
15431418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 15450827 - 15450990
Alignment:
| Q |
74 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
15450827 |
agaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactggaatgagaacattatat |
15450926 |
T |
|
| Q |
174 |
taactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattgtaaaat |
237 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15450927 |
taactgattgttatatgaatattatgcatgagttcattcagtattgaaatcaatattgtaaaat |
15450990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 16944265 - 16944452
Alignment:
| Q |
44 |
gatagagcacaaaagagaggaattttaataagaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggat |
143 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16944265 |
gatagagcacaaaagcgaggaaatttaataagaatttgcagaagaaaatacagattttagaaaaactctcaattaataaggtcaaataatgaaaatggat |
16944364 |
T |
|
| Q |
144 |
gaattatgcactagaatgagaacattgtattaactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattg |
231 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
16944365 |
gaattgtgtactagaatgagaacattgtactaactgattgttatatgaatattatgcatgagttcattaagtattgaaatcaaaattg |
16944452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 233 - 388
Target Start/End: Original strand, 15431970 - 15432125
Alignment:
| Q |
233 |
aaaatcagatgatacctgagtattgttaaataataaatagtagttgtagcgtcgtgtcaccattgcattgcagaatttacacaaatcattggttttttgc |
332 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15431970 |
aaaatcagatgatacctgaatattgttaaataataaatagtagttgcagcggcgtgtcaccattgcattgcagaatttacacaaatcattgtttttttgc |
15432069 |
T |
|
| Q |
333 |
gatgctttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagca |
388 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15432070 |
gatactttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagca |
15432125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 15431419 - 15431575
Alignment:
| Q |
75 |
gaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15431419 |
gaatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcacaagaatgagaacattgtatt |
15431518 |
T |
|
| Q |
175 |
aactaattgtaatatgaatattatgcatgagttcattcagtattgaaatcaatattg |
231 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
15431519 |
aacgttttgttatatgaatattatgcatgagttcattcagtattgtaataaatattg |
15431575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 233 - 388
Target Start/End: Original strand, 15490325 - 15490480
Alignment:
| Q |
233 |
aaaatcagatgatacctgagtattgttaaataataaatagtagttgtagcgtcgtgtcaccattgcattgcagaatttacacaaatcattggttttttgc |
332 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
15490325 |
aaaatcagataatacctgagtattgttaaataataaatagtagctgtagcggcgtgtcaccattgcattccagaatttacacaaatcattgtttttttgc |
15490424 |
T |
|
| Q |
333 |
gatgctttatttagcacaaagtattacgaaatagcggctatagtggtgctaaagca |
388 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15490425 |
gatactttatttagcacaaagtattacgaaatagcggctatagtggtgctacagca |
15490480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 15534703 - 15534805
Alignment:
| Q |
76 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
175 |
Q |
| |
|
||||||| |||||||| ||| ||| ||| ||||||||||||||| |||||| ||| ||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
15534703 |
aatttgcagaagaaaacacaaattttaggaaaactctcaattaacaaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
15534802 |
T |
|
| Q |
176 |
act |
178 |
Q |
| |
|
||| |
|
|
| T |
15534803 |
act |
15534805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 15450711 - 15450765
Alignment:
| Q |
4 |
ggggagtgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaag |
58 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15450711 |
ggggagcgcgatagaaacatcattatcatgaaaaattgcagatagagcacaaaag |
15450765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 16944977 - 16945027
Alignment:
| Q |
233 |
aaaatcagatgatacctgagtattgttaaataataaatagtagttgtagcg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16944977 |
aaaatcagatgatacctgagtattgttaaataataaatactagttgtagcg |
16945027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 15480942 - 15480846
Alignment:
| Q |
76 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgta |
172 |
Q |
| |
|
||||||| ||||||||||| | | ||| ||||||||||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
15480942 |
aatttgcaaaagaaaatacaaaatttaggaaaactctcaattaacgaggtcgaatgatgaaaatggatggattatgcacttaaatgagaacattgta |
15480846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 15427852 - 15427954
Alignment:
| Q |
76 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
175 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||| ||| ||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
15427852 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtccaatgatgaaaatggacggattatgcacttgaatgagaacattgtagta |
15427951 |
T |
|
| Q |
176 |
act |
178 |
Q |
| |
|
||| |
|
|
| T |
15427952 |
act |
15427954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 15483762 - 15483864
Alignment:
| Q |
76 |
aatttgcggaagaaaatacagattgtagaaaaactctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtatta |
175 |
Q |
| |
|
||||||| ||||||| | | ||| ||| ||||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||| ||||||||| || |
|
|
| T |
15483762 |
aatttgcataagaaaacagaaattttaggaaaactctcaattaacgaggtcaaatgatgaaaatggacggattatgcacttgaatgaaaacattgtagta |
15483861 |
T |
|
| Q |
176 |
act |
178 |
Q |
| |
|
||| |
|
|
| T |
15483862 |
act |
15483864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 15447384 - 15447454
Alignment:
| Q |
108 |
actctcaattaataaggtcaaataatgaaaatggatgaattatgcactagaatgagaacattgtattaact |
178 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||| | |||||||||| |||||||||||||||| ||||| |
|
|
| T |
15447384 |
actctcaattaacgaggtcgaatgatgaaaatggacggattatgcacttgaatgagaacattgtagtaact |
15447454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 15558510 - 15558551
Alignment:
| Q |
287 |
tgtcaccattgcattgcagaatttacacaaatcattggtttt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15558510 |
tgtcaccattgcattgcagaatttacacaaatcattgatttt |
15558551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 15512004 - 15512066
Alignment:
| Q |
290 |
caccattgcattgcagaatttacacaaatcattggttttttgcgatgctttatttagcacaaa |
352 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | | || |||||| |||||||||| ||||| |
|
|
| T |
15512004 |
caccattgcattgcagaatttaaacaaatcatcgttgttctgcgatactttatttagtacaaa |
15512066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15450793 - 15450825
Alignment:
| Q |
1 |
atgggggagtgcgatagaaacatcattatcatg |
33 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
15450793 |
atgggggagcgcgatagaaacatcattatcatg |
15450825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1195
Description:
Target: scaffold1195; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 1160 - 1195
Alignment:
| Q |
287 |
tgtcaccattgcattgcagaatttacacaaatcatt |
322 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1160 |
tgtcaccattgcattgcagtatttacacaaatcatt |
1195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 9446306 - 9446346
Alignment:
| Q |
340 |
tatttagcacaaagtattacgaaatagcggctatagtggtg |
380 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
9446306 |
tatttagtacaaaatattatgaaatagcggctatagtggtg |
9446346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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