View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_18 (Length: 405)
Name: NF17087_high_18
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_18 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 36903351 - 36903738
Alignment:
| Q |
18 |
acttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctct |
117 |
Q |
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| T |
36903351 |
acttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctct |
36903450 |
T |
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| Q |
118 |
gtaccattatcttctaacagctattttcactaagataccaagggcaattgatgacgttgacattttttaagaacctctatatcactatttggaataatca |
217 |
Q |
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| T |
36903451 |
gtaccattatcttctaacagctattttcactaagataccaagggcaattgatgacgttgacattttttaagaacctctatatcactatttggaataatca |
36903550 |
T |
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| Q |
218 |
atgtggtgttggatatattcatttgtaatatgtaatgcttttaattatttttcttctttggctggttatgtgtgttgaagttgagatcatttggcatact |
317 |
Q |
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| T |
36903551 |
atgtggtgttggatatattcatttgtaatatgtaatgcttttaattatttttcttctttggctggttatgtgtgttgaagttgagatcatttggcatact |
36903650 |
T |
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| Q |
318 |
tctagataaacttttgatataaacatgatgcttcgaaatgtaataatatcttttatgtaactgatttaagcttatactagatttttgt |
405 |
Q |
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| T |
36903651 |
tctagataaacttttgatataaacatgatgcttcgaaatgtaataatatcttttatgtaactgatttaagcttatactagatttttgt |
36903738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 36883548 - 36883697
Alignment:
| Q |
20 |
ttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctctgt |
119 |
Q |
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| T |
36883548 |
ttttttctgcttagccataattttaagtcgattttgttcccaatttatgcagcaacttgtttgcctgtgactttctatgccgttgcacaatttcctcttt |
36883647 |
T |
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| Q |
120 |
accattatcttctaacagctattttcactaagataccaagggcaattgat |
169 |
Q |
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| T |
36883648 |
actttgatcttataacgtctattttaactaaggttccaacggcaactgat |
36883697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 36893551 - 36893629
Alignment:
| Q |
20 |
ttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatg |
98 |
Q |
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| T |
36893551 |
ttttttctgcttagccataattttaagtcggttttgttcccaatttacgcagcaacttgtttgcctgtgactttctatg |
36893629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 36893735 - 36893775
Alignment:
| Q |
219 |
tgtggtgttggatatattcatttgtaatatgtaatgctttt |
259 |
Q |
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| T |
36893735 |
tgtggtgttggatagattcatatgtaatatgtaaagctttt |
36893775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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