View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_high_19 (Length: 389)

Name: NF17087_high_19
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_high_19
NF17087_high_19
[»] chr3 (17 HSPs)
chr3 (124-374)||(31595659-31595909)
chr3 (14-106)||(31595190-31595282)
chr3 (124-184)||(31595134-31595194)
chr3 (51-119)||(31595784-31595852)
chr3 (125-245)||(25081474-25081595)
chr3 (133-206)||(38018633-38018707)
chr3 (125-170)||(48058275-48058320)
chr3 (124-169)||(54516961-54517006)
chr3 (128-180)||(29749328-29749380)
chr3 (154-205)||(36864564-36864615)
chr3 (147-185)||(11617438-11617476)
chr3 (194-249)||(31595190-31595245)
chr3 (36-112)||(25081455-25081532)
chr3 (125-170)||(36244153-36244198)
chr3 (129-170)||(48058962-48059003)
chr3 (119-147)||(11319710-11319738)
chr3 (119-147)||(55337614-55337642)
[»] chr1 (17 HSPs)
chr1 (125-326)||(39869332-39869533)
chr1 (129-249)||(39869916-39870035)
chr1 (14-113)||(39869879-39869978)
chr1 (124-248)||(36681525-36681650)
chr1 (125-249)||(36682190-36682315)
chr1 (125-169)||(19790840-19790884)
chr1 (124-174)||(15601467-15601517)
chr1 (125-170)||(2071475-2071520)
chr1 (154-205)||(19534096-19534147)
chr1 (35-112)||(36682174-36682252)
chr1 (128-170)||(49359642-49359684)
chr1 (124-167)||(2070786-2070829)
chr1 (147-185)||(14235973-14236011)
chr1 (147-185)||(14237371-14237409)
chr1 (128-170)||(49361980-49362022)
chr1 (51-116)||(39869391-39869456)
chr1 (125-170)||(50546061-50546106)
[»] chr8 (16 HSPs)
chr8 (124-248)||(37550867-37550992)
chr8 (124-249)||(37550201-37550327)
chr8 (125-247)||(39320931-39321054)
chr8 (163-247)||(7089783-7089868)
chr8 (131-211)||(16664639-16664719)
chr8 (163-247)||(22589713-22589798)
chr8 (124-180)||(36697681-36697737)
chr8 (125-180)||(16723683-16723738)
chr8 (119-194)||(37550993-37551068)
chr8 (125-211)||(23017264-23017351)
chr8 (138-170)||(44495131-44495163)
chr8 (35-112)||(37550265-37550343)
chr8 (125-170)||(24287617-24287662)
chr8 (125-173)||(23546145-23546193)
chr8 (125-173)||(23546906-23546954)
chr8 (124-180)||(43306685-43306741)
[»] chr2 (4 HSPs)
chr2 (119-247)||(42112296-42112425)
chr2 (127-168)||(25616852-25616893)
chr2 (125-170)||(30266321-30266366)
chr2 (133-170)||(30784884-30784921)
[»] chr4 (11 HSPs)
chr4 (125-249)||(33351370-33351495)
chr4 (124-248)||(33352035-33352160)
chr4 (133-185)||(49574732-49574784)
chr4 (125-185)||(19638103-19638163)
chr4 (125-168)||(21436558-21436601)
chr4 (133-170)||(33581140-33581177)
chr4 (35-112)||(33351433-33351511)
chr4 (127-185)||(39832014-39832072)
chr4 (125-170)||(43428476-43428521)
chr4 (125-161)||(20422946-20422982)
chr4 (127-170)||(49648239-49648283)
[»] scaffold0434 (1 HSPs)
scaffold0434 (163-249)||(12742-12829)
[»] chr6 (5 HSPs)
chr6 (119-168)||(20756414-20756463)
chr6 (124-170)||(15997538-15997584)
chr6 (125-185)||(20508611-20508671)
chr6 (133-170)||(4279094-4279131)
chr6 (133-170)||(4284352-4284389)
[»] chr7 (3 HSPs)
chr7 (133-180)||(29064747-29064794)
chr7 (124-170)||(19068464-19068510)
chr7 (125-170)||(45432966-45433011)
[»] chr5 (9 HSPs)
chr5 (125-170)||(33574029-33574074)
chr5 (123-180)||(35424264-35424321)
chr5 (127-170)||(10470062-10470105)
chr5 (125-185)||(14098496-14098556)
chr5 (138-170)||(30576042-30576074)
chr5 (119-163)||(42655798-42655842)
chr5 (129-190)||(14099228-14099290)
chr5 (125-169)||(10470849-10470894)
chr5 (127-170)||(26015501-26015545)
[»] scaffold0006 (1 HSPs)
scaffold0006 (119-170)||(223801-223852)
[»] scaffold0285 (1 HSPs)
scaffold0285 (124-194)||(17518-17588)
[»] scaffold1370 (1 HSPs)
scaffold1370 (125-172)||(202-249)
[»] scaffold0159 (1 HSPs)
scaffold0159 (125-170)||(28154-28199)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 124 - 374
Target Start/End: Complemental strand, 31595909 - 31595659
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcatcagctttaat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  31595909 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaa 31595810  T
Q  224 atatactaaaatcatgtgattaattttcatcttcttttctgtaccgtttggatttctttcgcctagttcctgtgaatttcctcaaaccccattgcttcaa 323  Q
    |   ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |    
T  31595809 acccactaaaaccatgtgattaattttcatcttcttctctgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaaccccattgcttcga 31595710  T
Q  324 tacccacaaatttcctcctcttcaaatttccagttttgaaaaaactttttg 374  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31595709 tacccacaaatttcctcttcttcaaatttccagttttgaaaaaactttttg 31595659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 31595282 - 31595190
Alignment:
Q  14 cagagaaaaaagggaagcgctgcttgagaagaaggggaaattaatcagatggttttggtaggttttaaagcttaagcatctttaccgttggtt 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||| ||||||||||    
T  31595282 cagagaaaaaagggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaagctgaagcatcttaaccgttggtt 31595190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 31595134 - 31595194
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaacca 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31595134 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaacca 31595194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 31595784 - 31595852
Alignment:
Q  51 aaattaatcagatggttttggtaggttttaaagcttaagcatctttaccgttggttttaatcaaatggt 119  Q
    |||||||||| |||||||| || |||||||||||| ||||||||| ||||||||||||||||| |||||    
T  31595784 aaattaatcacatggttttagtgggttttaaagctgaagcatcttaaccgttggttttaatcagatggt 31595852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 25081595 - 25081474
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagctttaa 222  Q
    |||||||||||||||||||||||| ||| | ||||||  |||||||| | ||| | ||||||| ||||||||||||||||||||||||  ||||||||||    
T  25081595 agggcatatcaagtgagaggagttgttatagtgagaga-tgagaggattgatttataaccatcagattaaaaccaacggttaagatgctttcagctttaa 25081497  T
Q  223 tatatactaaaatcatgtgatta 245  Q
     ||  | ||||| ||||||||||    
T  25081496 aattaattaaaaccatgtgatta 25081474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 38018633 - 38018707
Alignment:
Q  133 tcaagtgagaggagttttta-aatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaa 206  Q
    |||||||||||||||   || |||||||||||||||||||||||||||| ||||| ||||||| || ||||||||    
T  38018633 tcaagtgagaggagtggctacaatgagagggtgagaggagtaattaacagccatccgattaaatcctacggttaa 38018707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 48058275 - 48058320
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  48058275 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 48058320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 54516961 - 54517006
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagg 169  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  54516961 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagg 54517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 29749380 - 29749328
Alignment:
Q  128 gcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 180  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||| |||||    
T  29749380 gcatttcaaatgagaggactttttaaatgagagggtgagaggagtaaataaca 29749328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 36864615 - 36864564
Alignment:
Q  154 atgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggtta 205  Q
    ||||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  36864615 atgagagggtgagaggagtaaataataaccatcagatttaaaccaacggtta 36864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 11617438 - 11617476
Alignment:
Q  147 tttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  11617438 tttttaaatgagagggtgagaggagtaaataacaaccat 11617476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 31595190 - 31595245
Alignment:
Q  194 aaccaacggttaagatgcatcagctttaatatatactaaaatcatgtgattaattt 249  Q
    |||||||||||||||||| |||||||||| |   ||||||| ||||||||||||||    
T  31595190 aaccaacggttaagatgcttcagctttaaaacccactaaaaccatgtgattaattt 31595245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 25081455 - 25081532
Alignment:
Q  36 cttgagaagaaggggaaattaatcagatggttttggtaggttttaaagct-taagcatctttaccgttggttttaatc 112  Q
    ||||||||||||| |||| |||||| ||||||||  |   ||||||||||  ||||||||| ||||||||||||||||    
T  25081455 cttgagaagaaggagaaaataatcacatggttttaattaattttaaagctgaaagcatcttaaccgttggttttaatc 25081532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 36244198 - 36244153
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||| |||| ||||| || ||||||||||||||||||||||||    
T  36244198 agggcatttcaaatgagatgattttttaaatgagagggtgagagga 36244153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 48059003 - 48058962
Alignment:
Q  129 catatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  48059003 catatcaagtaagaggaattttaaaatgagagggtgagagga 48058962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 11319738 - 11319710
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagt 147  Q
    |||||||||||||||||||||||||||||    
T  11319738 tatatgagggcatatcaagtgagaggagt 11319710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 55337642 - 55337614
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagt 147  Q
    |||||||||||||||||||||||||||||    
T  55337642 tatatgagggcatatcaagtgagaggagt 55337614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 39869332 - 39869533
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcatcagctttaata 224  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||| |    
T  39869332 agggcatatcaaattagatgagtttttaaatgagagggtgagaggagtaattaacaactatttgattaaaaccaatggttaagatgcttcagctttaaaa 39869431  T
Q  225 tatactaaaatcatgtgattaattttcatcttcttttctgtaccgtttggatttctttcgcctagttcctgtgaatttcctcaaaccccattgcttcaat 324  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||    
T  39869432 tatattaaaatcatgtgattaattttcatcttcttctttgtaccgtttggatttcttttgcctagttcctatgaatttcctcaaaccccattgcttcgat 39869531  T
Q  325 ac 326  Q
    ||    
T  39869532 ac 39869533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 39870035 - 39869916
Alignment:
Q  129 catatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcatcagctttaatatata 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| |   |    
T  39870035 catatcaagtgagaggagtttttaaatgagagggtgagacgagtaattaacaa-catctgattaaaaccaacggttaagatgcttcagatttaaaaccca 39869937  T
Q  229 ctaaaatcatgtgattaattt 249  Q
    |||||| ||||||||||||||    
T  39869936 ctaaaaccatgtgattaattt 39869916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 39869879 - 39869978
Alignment:
Q  14 cagagaaaaaagggaagcgctgcttgagaagaaggggaaattaatcagatggttttggtaggttttaaagcttaagcatctttaccgttggttttaatca 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||| || ||||||||| |||||||||||||||||    
T  39869879 cagagaaaaaagggaagcgatgcttgagaagaaggggaaattaatcacatggttttagtgggttttaaatctgaagcatcttaaccgttggttttaatca 39869978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 36681525 - 36681650
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagcttta 221  Q
    |||| |||||||||||||||||||| ||| | ||||||  |||||||||||||||| ||||||  ||||||| ||||||||||||||||  |||||||||    
T  36681525 gaggacatatcaagtgagaggagttgttatagtgagaga-tgagaggagtaattaataaccattcgattaaatccaacggttaagatgctttcagcttta 36681623  T
Q  222 atatatactaaaatcatgtgattaatt 248  Q
    | ||||| ||||| |||||||||||||    
T  36681624 aaatataataaaaccatgtgattaatt 36681650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 36682315 - 36682190
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagctttaa 222  Q
    |||||||||||| ||||||||||| ||| | ||||||  |||||||||||||||||||||||| ||||||| ||||||| ||||||||  ||| ||||||    
T  36682315 agggcatatcaaatgagaggagttgttatagtgagaga-tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaa 36682217  T
Q  223 tatatactaaaatcatgtgattaattt 249  Q
     ||||||||||| ||| ||||||||||    
T  36682216 aatatactaaaaccatatgattaattt 36682190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 19790840 - 19790884
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagg 169  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  19790840 agggcatatcaagtgagaggagttttaaaatgagagggtgagagg 19790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 15601517 - 15601467
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaa 174  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  15601517 gagggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaa 15601467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 2071520 - 2071475
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  2071520 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 2071475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 19534096 - 19534147
Alignment:
Q  154 atgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggtta 205  Q
    ||||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  19534096 atgagagggtgagaggagtaaataataaccatcagatttaaaccaacggtta 19534147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 36682174 - 36682252
Alignment:
Q  35 gcttgagaagaaggggaaattaatcagatggttttggtaggttttaaagct-taagcatctttaccgttggttttaatc 112  Q
    |||||||||||||||||||||||||| |||||||| |||  |||||||| |  |||||||||  ||||||| |||||||    
T  36682174 gcttgagaagaaggggaaattaatcatatggttttagtatattttaaagttgaaagcatcttagccgttggatttaatc 36682252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 49359642 - 49359684
Alignment:
Q  128 gcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  49359642 gcatttcaaatgagaggagtttttaaatgagagggtgagagga 49359684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 2070786 - 2070829
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgaga 167  Q
    ||||||||||||||||||| || |||| ||||||||||||||||    
T  2070786 gagggcatatcaagtgagaagacttttaaaatgagagggtgaga 2070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 14235973 - 14236011
Alignment:
Q  147 tttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14235973 tttttaaatgagagggtgagaggagtaaataacagccat 14236011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 14237409 - 14237371
Alignment:
Q  147 tttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14237409 tttttaaatgagagggtgagaggagtaaataacatccat 14237371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 49362022 - 49361980
Alignment:
Q  128 gcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||| |||| |||||||||||||||||||||| ||||||||||    
T  49362022 gcatttcaaatgagaggagtttttaaatgagaaggtgagagga 49361980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 39869456 - 39869391
Alignment:
Q  51 aaattaatcagatggttttggtaggttttaaagcttaagcatctttaccgttggttttaatcaaat 116  Q
    |||||||||| ||| ||||  ||  |||||||||| ||||||||| ||| ||||||||||||||||    
T  39869456 aaattaatcacatgattttaatatattttaaagctgaagcatcttaaccattggttttaatcaaat 39869391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 50546106 - 50546061
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||    
T  50546106 agggcatatcaagtaagaggacttttaaaatgagagggtaagagga 50546061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 37550992 - 37550867
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagcttta 221  Q
    |||| |||||||||||||||||||| ||| | ||||||  |||||||||||||||| ||||||| ||||||| ||||||||||||||||  |||||||||    
T  37550992 gaggacatatcaagtgagaggagttgttatagtgagaga-tgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagcttta 37550894  T
Q  222 atatatactaaaatcatgtgattaatt 248  Q
    | ||||| ||||| |||||||||||||    
T  37550893 aaatataataaaaccatgtgattaatt 37550867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 37550201 - 37550327
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagcttta 221  Q
    ||||||||||||| ||||||||||| ||| | ||||||  |||||||||||||||||||||||| ||||||| ||||||| ||||||||  ||| |||||    
T  37550201 gagggcatatcaaatgagaggagttgttatagtgagaga-tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaacttta 37550299  T
Q  222 atatatactaaaatcatgtgattaattt 249  Q
    | ||||||||||| ||| ||||||||||    
T  37550300 aaatatactaaaaccatatgattaattt 37550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 39320931 - 39321054
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagctttaa 222  Q
    |||||||||||||||||| || || ||| | ||||||  ||||||||||||||| |||||||| ||||||| |||| || ||||||||  ||||||||||    
T  39320931 agggcatatcaagtgagatgacttgttatagtgagaga-tgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagctttaa 39321029  T
Q  223 tatatactaaaatcatgtgattaat 247  Q
     ||||||||||| || |||||||||    
T  39321030 aatatactaaaaccacgtgattaat 39321054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 7089868 - 7089783
Alignment:
Q  163 tgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcatc-agctttaatatatactaaaatcatgtgattaat 247  Q
    |||||| |||||||| |||||||| ||||||| |||| || |||||||| |  |||||||| ||||||||||| ||||||||||||    
T  7089868 tgagagaagtaattagcaaccatccgattaaatccaatggctaagatgcttttagctttaaaatatactaaaaccatgtgattaat 7089783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 16664639 - 16664719
Alignment:
Q  131 tatcaagtgagaggagttttta-aatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc 211  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| |||| || ||||||||||||| ||||||||||| ||||    
T  16664639 tatcaagttagaggactttttataatgagagg-tgagaggagtgattagcatccatctgattaaatccaacggttaaaatgc 16664719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 22589713 - 22589798
Alignment:
Q  163 tgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagctttaatatatactaaaatcatgtgattaat 247  Q
    |||||||||||||||||| |||||  |||||||||||| ||||||||||  |||||||||| |  || ||||| ||||||||||||    
T  22589713 tgagaggagtaattaacatccatcacattaaaaccaacagttaagatgctttcagctttaaaacctattaaaaccatgtgattaat 22589798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 36697681 - 36697737
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 180  Q
    |||| ||| |||| |||||||| |||||||||||||||||||||||||||| |||||    
T  36697681 gaggacatttcaaatgagaggactttttaaatgagagggtgagaggagtaaataaca 36697737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 16723683 - 16723738
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 180  Q
    ||||||| |||| |||||||| |||| ||||||||||||||||||||||| |||||    
T  16723683 agggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaataaca 16723738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 37550993 - 37551068
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaa 194  Q
    ||||||||||||| |||| |||||||  ||||||||||||||| |||||||||| | ||| ||||||  |||||||    
T  37550993 tatatgagggcatttcaaatgagagggctttttaaatgagaggatgagaggagttaataagaaccattagattaaa 37551068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 23017264 - 23017351
Alignment:
Q  125 agggcatatcaa-gtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc 211  Q
    |||||||||||| |||||||||||| ||| | ||||||  ||||||||| ||||| ||  |||| ||||||||||||||||||||||||    
T  23017264 agggcatatcaaagtgagaggagttgttatagtgagaga-tgagaggagcaattatcaggcatcagattaaaaccaacggttaagatgc 23017351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 44495163 - 44495131
Alignment:
Q  138 tgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||||||||||||||||||||||||||||    
T  44495163 tgagaggagtttttaaatgagagggtgagagga 44495131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 37550343 - 37550265
Alignment:
Q  35 gcttgagaagaaggggaaattaatcagatggttttggtaggttttaaagct-taagcatctttaccgttggttttaatc 112  Q
    |||| ||||||||||||||||||||| |||||||| |||  |||||||| |  |||||||||  ||||||| |||||||    
T  37550343 gcttaagaagaaggggaaattaatcatatggttttagtatattttaaagttgaaagcatcttagccgttggatttaatc 37550265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 24287662 - 24287617
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||| |||| |||||||  ||||||||||||||||||||||||    
T  24287662 agggcatttcaaatgagagggttttttaaatgagagggtgagagga 24287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 23546145 - 23546193
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagta 173  Q
    ||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  23546145 agggcatttcaaatgagagggcattttaaatgagagggtgagaggagta 23546193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 23546954 - 23546906
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagta 173  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||||||    
T  23546954 agggcatttcaaatgagagagctttttaaatgagagggtgagaggagta 23546906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 43306685 - 43306741
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 180  Q
    |||||||| |||| |||||||| |||| |||||||||||||  |||||||| |||||    
T  43306685 gagggcatttcaaatgagaggatttttaaaatgagagggtggaaggagtaaataaca 43306741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 42112425 - 42112296
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcag 216  Q
    ||||||||||||||||||||||||||| || ||| | ||||||  ||||||||||||||| |||||||| ||||||| |||| || ||||||||  ||||    
T  42112425 tatatgagggcatatcaagtgagaggacttcttatagtgagaga-tgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcag 42112327  T
Q  217 ctttaatatatactaaaatcatgtgattaat 247  Q
    |||||| ||||||||||| ||||||||||||    
T  42112326 ctttaaaatatactaaaaccatgtgattaat 42112296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 25616852 - 25616893
Alignment:
Q  127 ggcatatcaagtgagaggagtttttaaatgagagggtgagag 168  Q
    ||||| |||| |||||||| ||||||||||||||||||||||    
T  25616852 ggcatttcaaatgagaggactttttaaatgagagggtgagag 25616893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 30266321 - 30266366
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||| |||| |||||| | ||||||||||||||||||||||||    
T  30266321 agggcatttcaaatgagagcactttttaaatgagagggtgagagga 30266366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 30784884 - 30784921
Alignment:
Q  133 tcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30784884 tcaaatgagaggactttttaaatgagagggtgagagga 30784921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 33351370 - 33351495
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagctttaa 222  Q
    |||||||||||| ||||||||||| ||| | ||||||  |||||||||||||||||||||||| ||||||| ||||||| ||||||||  ||| ||||||    
T  33351370 agggcatatcaaatgagaggagttgttatagtgagaga-tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaa 33351468  T
Q  223 tatatactaaaatcatgtgattaattt 249  Q
     ||||||||||| ||| ||||||||||    
T  33351469 aatatactaaaaccatatgattaattt 33351495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 33352160 - 33352035
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-atcagcttta 221  Q
    |||| |||||||||||||| ||||| ||| | ||||||  |||||||||||||||| ||||||| ||||||| ||||||||||||||||  |||||||||    
T  33352160 gaggacatatcaagtgagatgagttgttatagtgagaga-tgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagcttta 33352062  T
Q  222 atatatactaaaatcatgtgattaatt 248  Q
    | ||||| ||||| |||||||||||||    
T  33352061 aaatataataaaaccatgtgattaatt 33352035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 49574784 - 49574732
Alignment:
Q  133 tcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    |||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  49574784 tcaaatgagaggactttttaaatgagagggtgagaggagtaaataacaaccat 49574732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 19638103 - 19638163
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||| ||| | ||||||||    
T  19638103 agggcatttcaaatgagaggaatttttaaatgagagggtgagaggattaaatcacaaccat 19638163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 21436558 - 21436601
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagag 168  Q
    ||||||| |||| |||||||||||||||||||||||||||||||    
T  21436558 agggcatttcaaatgagaggagtttttaaatgagagggtgagag 21436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 33581177 - 33581140
Alignment:
Q  133 tcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33581177 tcaaatgagaggagtttttaaatgagagggtgagagga 33581140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 33351511 - 33351433
Alignment:
Q  35 gcttgagaagaaggggaaattaatcagatggttttggtaggttttaaagct-taagcatctttaccgttggttttaatc 112  Q
    |||| ||||||||||||||||||||| |||||||| |||  |||||||| |  |||||||||  ||||||| |||||||    
T  33351511 gcttaagaagaaggggaaattaatcatatggttttagtatattttaaagttgaaagcatcttagccgttggatttaatc 33351433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 39832072 - 39832014
Alignment:
Q  127 ggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    ||||| ||||||||||| | ||||||||||||||| |||||||| | ||||| ||||||    
T  39832072 ggcatttcaagtgagagcactttttaaatgagaggatgagaggactcattaataaccat 39832014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 43428476 - 43428521
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||| | || |||||||| ||||||||||||||||||||||||    
T  43428476 agggcattttaaatgagaggactttttaaatgagagggtgagagga 43428521  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 20422946 - 20422982
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagg 161  Q
    |||||||||||||||||| || |||||||||||||||    
T  20422946 agggcatatcaagtgagatgattttttaaatgagagg 20422982  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 49648283 - 49648239
Alignment:
Q  127 ggcatatcaagtgagaggagttttta-aatgagagggtgagagga 170  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||    
T  49648283 ggcatatcaagtgagaggagtagttataatgagagggtgagagga 49648239  T

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Target: scaffold0434 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 12829 - 12742
Alignment:
Q  163 tgagaggagtaattaacaaccatctgattaaaaccaacggttaagat-gcatcagctttaatatatactaaaatcatgtgattaattt 249  Q
    ||||||||| |||||||||||||| ||||||| |||| ||||||||| |  ||| |||||| ||||||||||| ||||||||||||||    
T  12829 tgagaggagcaattaacaaccatccgattaaatccaatggttaagatggtttcaactttaaaatatactaaaaccatgtgattaattt 12742  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 20756463 - 20756414
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagtttttaaatgagagggtgagag 168  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  20756463 tatatgagggcatttcaaatgagaggagtttttaaatgagagggtgagag 20756414  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 15997584 - 15997538
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  15997584 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagga 15997538  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 20508611 - 20508671
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    ||||||| |||| ||||| || |||||||||||||||||||||||| ||| | ||||||||    
T  20508611 agggcatttcaaatgagatgactttttaaatgagagggtgagaggattaaatcacaaccat 20508671  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 4279094 - 4279131
Alignment:
Q  133 tcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  4279094 tcaaatgagaggactttttaaatgagagggtgagagga 4279131  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 4284389 - 4284352
Alignment:
Q  133 tcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  4284389 tcaaatgagaggactttttaaatgagagggtgagagga 4284352  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 29064747 - 29064794
Alignment:
Q  133 tcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 180  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29064747 tcaaatgagaggagtttttaaatgagagggtgagaggagtaaataaca 29064794  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 19068464 - 19068510
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  19068464 gagggcatttcaaatgagaggactttttaaatgagagggtgagagga 19068510  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 45433011 - 45432966
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  45433011 agggcatttcaagtgagaggattttttaaatgagaggatgagagga 45432966  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 33574074 - 33574029
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  33574074 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 33574029  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 35424264 - 35424321
Alignment:
Q  123 tgagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 180  Q
    ||||||||| |||| |||||||| |||| ||||||||||||||||||||||| |||||    
T  35424264 tgagggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaataaca 35424321  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 10470062 - 10470105
Alignment:
Q  127 ggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  10470062 ggcatatcaagtgagaggattttttaaatgagaggatgagagga 10470105  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 14098496 - 14098556
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 185  Q
    ||||||| | || |||||||| |||||||||||||||||||||||| ||| | ||||||||    
T  14098496 agggcattttaaatgagaggactttttaaatgagagggtgagaggattaaatcacaaccat 14098556  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 30576074 - 30576042
Alignment:
Q  138 tgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||||||||||||||||||||||||||||    
T  30576074 tgagaggagtttttaaatgagagggtgagagga 30576042  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 42655842 - 42655798
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagtttttaaatgagagggt 163  Q
    ||||||||||||||||||||||||||| || | ||||||||||||    
T  42655842 tatatgagggcatatcaagtgagaggacttataaaatgagagggt 42655798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 14099290 - 14099228
Alignment:
Q  129 catatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgat 190  Q
    ||||||||||||||||||| ||||   |||||| ||||||||| ||||||| |||||||||||    
T  14099290 catatcaagtgagaggagtatttattgtgagagagtgagaggaataattaataaccatctgat 14099228  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 10470894 - 10470849
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaa-atgagagggtgagagg 169  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||    
T  10470894 agggcatatcaagtgagaggactatttaatatgagagggtgagagg 10470849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 26015501 - 26015545
Alignment:
Q  127 ggcatatcaagtgagaggagt-ttttaaatgagagggtgagagga 170  Q
    |||||||||||||||||||||   |||||||||||||||||||||    
T  26015501 ggcatatcaagtgagaggagtaacttaaatgagagggtgagagga 26015545  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 223801 - 223852
Alignment:
Q  119 tatatgagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||| |||||    
T  223801 tatatgagggcatatcaagtaagaggacttttaaaatgagagggtgggagga 223852  T

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Target: scaffold0285 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 17588 - 17518
Alignment:
Q  124 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaa 194  Q
    |||||||| |||| |||||||| ||||||||||||||| |||||||||| | ||| ||||||  |||||||    
T  17588 gagggcatttcaaatgagaggattttttaaatgagaggatgagaggagttaataagaaccattagattaaa 17518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 202 - 249
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagt 172  Q
    ||||||| |||| |||||||| ||||||||||||||| ||||||||||    
T  202 agggcatttcaaatgagaggactttttaaatgagaggatgagaggagt 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 28154 - 28199
Alignment:
Q  125 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 170  Q
    ||||||| |||| | |||||| ||||||||||||||||||||||||    
T  28154 agggcatttcaaataagaggactttttaaatgagagggtgagagga 28199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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