View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_21 (Length: 384)
Name: NF17087_high_21
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 50 - 365
Target Start/End: Complemental strand, 760716 - 760399
Alignment:
| Q |
50 |
accttcagaaagcatggcattgaccaaatgtaaggcatcatcgaccttgttggattccagaaatgcctacaataaaacagcatgtgtgagagggacaaca |
149 |
Q |
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| T |
760716 |
accttcataaagcatggcattgaacaaatggaaggcatcatctaccttgttgaaatctagaaatgccttcaataaaacagcatgtgtgaccgggacaaca |
760617 |
T |
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| Q |
150 |
ctagaagaacaatccgtttgaatcatgttaaagaaaaagctgatacacttgtggcatgacatcatcattcaatttacaaatggattccaaaaccttgtta |
249 |
Q |
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| T |
760616 |
ctagaagaacaatacgtttgaatcatgttaaagaaaaagctgatacacttgtggcatgacatcatcattcaatttacaaatggattccaaaaccttgtta |
760517 |
T |
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| Q |
250 |
aaagttatgttaccagggtaataagcttggctccttcaacatgagtctgaggtattctgaa--agtgggaatgtccattgtgcggcaaaggtgaaaaagt |
347 |
Q |
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| T |
760516 |
aaagttatgttaccagggtaataagcttggctccttcaacatgagtctgaggtattctgaaagagtgggaatgtccattgtgcggcaaaggtgaaaaagt |
760417 |
T |
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| Q |
348 |
gcaacattgagagttgaa |
365 |
Q |
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| T |
760416 |
gcaacgttgagagttgaa |
760399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 760809 - 760766
Alignment:
| Q |
14 |
aatatcacgatacgcactaactgcttcatctattctaccttcag |
57 |
Q |
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| T |
760809 |
aatatcacgatacgcactaactgcttcatccattctaccatcag |
760766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 1409045 - 1409082
Alignment:
| Q |
17 |
atcacgatacgcactaactgcttcatctattctacctt |
54 |
Q |
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| T |
1409045 |
atcatgatacgcactaactgcttcatcgattctacctt |
1409082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 5934861 - 5934794
Alignment:
| Q |
50 |
accttcagaaagcatggcattgaccaaatgtaaggcatcatcgaccttgttggattccagaaatgcct |
117 |
Q |
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| T |
5934861 |
accttcagaatgcatggcattgaacaaatgtaacacatcatccaccttgttagattccagaaatgcct |
5934794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 5934728 - 5934691
Alignment:
| Q |
216 |
attcaatttacaaatggattccaaaaccttgttaaaag |
253 |
Q |
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| T |
5934728 |
attcaatttacaaatggattccagaaccttgttaaaag |
5934691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 43566805 - 43566859
Alignment:
| Q |
134 |
tgtgagagggacaacactagaagaacaatccgtttgaatcatgttaaagaaaaag |
188 |
Q |
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| T |
43566805 |
tgtgatagggacaacactaggaaaacaattggtttgaatcatgctaaagaaaaag |
43566859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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