View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_23 (Length: 383)
Name: NF17087_high_23
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 34097805 - 34098151
Alignment:
| Q |
19 |
tttgaaaacaagatgcatgttaatataaggagttaaaaagtgtttctttttccatgtagtaagagttgtatggcagagtggctgcctgtggcaaacatgc |
118 |
Q |
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| T |
34097805 |
tttgaaaacaagatgcatgttaatataaggagttaaaaagtgtttctttttccatgtagtaagagttgtatggcagagtggctgcctgtggcaaacatgc |
34097904 |
T |
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| Q |
119 |
tatatctctttgttctacttattatgaccacctttttaccttttaacttttctgtaatctctcttctttaggtaaaactgcaccctaatatctctcccta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097905 |
tatatctctttgttctacttattatgaccacctttttaccttttaacttttctgtaatctctcttctttaggtaaaactgcaccctaatatctctcccta |
34098004 |
T |
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| Q |
219 |
tgttctcttttcttactcacagttcaaacataggactacatcacaattcttttct--tctctctctatcagttttttattttataaaaaagtaatctaga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098005 |
tgttctcttttcttactcacagttcaaacataggactacatcacaattcttttcttctctctctctatcagttttttattttataaaaaagtaatctaga |
34098104 |
T |
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| Q |
317 |
ttagaatggttatatgtcaaagagaatcactaacctcaccttagaat |
363 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34098105 |
ttagaatggttatatgtcaaagagattcactaacctcaccttagaat |
34098151 |
T |
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