View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_high_30 (Length: 357)

Name: NF17087_high_30
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_high_30
NF17087_high_30
[»] chr1 (2 HSPs)
chr1 (19-347)||(17534940-17535268)
chr1 (48-196)||(26407993-26408141)
[»] chr5 (1 HSPs)
chr5 (48-196)||(27208898-27209046)
[»] chr4 (1 HSPs)
chr4 (48-196)||(26900485-26900633)
[»] chr3 (2 HSPs)
chr3 (48-196)||(23676107-23676255)
chr3 (48-196)||(24048383-24048531)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 17534940 - 17535268
Alignment:
Q  19 gaattaccttacatccttgctttgttgaaactctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatga 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17534940 gaattaccttacatccttgctttgttgcaactctaatgctccctttgccttcaacttcaaaaaattctccatttcctaatttaacttttgagccaaatga 17535039  T
Q  119 gggatcaatgtcaatgaaagcttctttatctcctgtcatatgattgctacacccgctgtccaagtaccacacatttttgtactcttcagttgccttgtga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17535040 gggatcaatgtcaatgaaagcttctttatctcctgtcatatgattgctacacccgctgtccaagtaccacacatttttgtactcttgagttgccttgtga 17535139  T
Q  219 caagcaaagaacaagttgacttcattgttttctgcttctgcaaatgctacatgctgctgattttgaaaccgacactctttctgcacatgtctaaaccttt 318  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  17535140 caagcaaaaaacaagttgacttcattgttttctgcttctacaaaagctacatgctgctgattttgcaaccgacactctttctgcacatgtccaaaccttt 17535239  T
Q  319 tgcaattatgacattgtggcttgcctttg 347  Q
    || ||||||||||||||||||| ||||||    
T  17535240 tgaaattatgacattgtggcttacctttg 17535268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 26408141 - 26407993
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  26408141 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 26408042  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  26408041 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 26407993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 27208898 - 27209046
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  27208898 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 27208997  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  27208998 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 27209046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 26900485 - 26900633
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  26900485 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 26900584  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  26900585 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 26900633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 23676255 - 23676107
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  23676255 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 23676156  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  23676155 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 23676107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 24048531 - 24048383
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  24048531 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 24048432  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  24048431 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 24048383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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