View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_32 (Length: 348)
Name: NF17087_high_32
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 32731149 - 32730820
Alignment:
| Q |
1 |
tttgtcgttataatttaaaatatcaagtttgaatatggatcatctgatcttgatagaacggccacttatgtccctattgcatgaatgcggagaatccctg |
100 |
Q |
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| T |
32731149 |
tttgtcgttataatttaaaatatcaagtttgaatatggatcatctgatgttgatagaacggccacttatgtccctattgcatgaatgcggagaatccctg |
32731050 |
T |
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| Q |
101 |
actgcagggtagccggatcccnnnnnnncacacttgatgattaccattaactgaataaacaaattaagagacatgttttacaatttttcatatatcaatc |
200 |
Q |
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| T |
32731049 |
actgcagggtagccggatcccaaaaatacacacttggtgattaccattaactgaataaacaaattaagagacatgttttacaatttttcatatatcaatc |
32730950 |
T |
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| Q |
201 |
tttctatctatgtatgtacattttaaggttggaagcagtggaagatccaagaaaggtgttgtagtggaagcaaaaattaaggtagccataaacggatttg |
300 |
Q |
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| T |
32730949 |
tttctatctatgtatgtacattttaaggttggaagcagtggaagatccaagaaaggtgttgtagtggaagcaaaaattaaggtagccataaacggatttg |
32730850 |
T |
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| Q |
301 |
gaaggatcggacggaacttcttgagatgtt |
330 |
Q |
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| T |
32730849 |
gaaggatcggacggaacttcttgagatgtt |
32730820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 32998432 - 32998371
Alignment:
| Q |
43 |
tctgatcttgatagaacggccacttatgtccctattgcatgaatgcggagaatccctgactgc |
105 |
Q |
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| T |
32998432 |
tctgatcttgat-gaacgactactgatgtcccaactgcatgaatgcggagaatccctaactgc |
32998371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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