View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_high_39 (Length: 315)

Name: NF17087_high_39
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_high_39
NF17087_high_39
[»] chr5 (15 HSPs)
chr5 (12-303)||(17383939-17384229)
chr5 (12-303)||(17392649-17392930)
chr5 (120-272)||(13711792-13711944)
chr5 (119-272)||(17380184-17380343)
chr5 (186-282)||(17377592-17377688)
chr5 (80-272)||(19969176-19969368)
chr5 (211-285)||(20112200-20112274)
chr5 (117-286)||(19653554-19653723)
chr5 (117-159)||(17377685-17377727)
chr5 (211-272)||(27358069-27358130)
chr5 (212-268)||(9619197-9619253)
chr5 (211-286)||(26536239-26536314)
chr5 (131-272)||(1347601-1347742)
chr5 (211-267)||(14308587-14308643)
chr5 (230-258)||(32429441-32429469)
[»] chr2 (1 HSPs)
chr2 (117-269)||(15784913-15785065)
[»] chr1 (1 HSPs)
chr1 (231-303)||(26052742-26052814)
[»] chr6 (2 HSPs)
chr6 (112-184)||(16258080-16258152)
chr6 (211-259)||(14438256-14438304)
[»] chr3 (8 HSPs)
chr3 (224-272)||(32224417-32224465)
chr3 (112-184)||(32226912-32226984)
chr3 (210-272)||(24890631-24890692)
chr3 (121-167)||(32241577-32241623)
chr3 (211-269)||(45763906-45763964)
chr3 (112-180)||(32224305-32224373)
chr3 (223-267)||(32241772-32241816)
chr3 (111-170)||(45763806-45763866)
[»] scaffold1377 (1 HSPs)
scaffold1377 (211-262)||(1347-1398)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 17384229 - 17383939
Alignment:
12 gaataagcctatattgttcgaaccatcgaatccagtagtagtaaatattgtaagtaacnnnnnnnccgggtatacatctgggaactattgagattcaaac 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||    
17384229 gaataagcctatattgttcgaaccatcaaatccagtagtagtaaatattgtaagtaacaaaaatacccggtatacatctgggaactattgagattcaaac 17384130  T
112 aatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17384129 aatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatgg 17384030  T
212 tcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtgcataacttcaaatttt 303  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
17384029 tcatat-ctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaatttt 17383939  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 17392930 - 17392649
Alignment:
12 gaataagcctatattgttcgaaccatcgaatccagtagtagtaaatattgtaagtaacnnnnnnnccgggtatacatctgggaactattgagattcaaac 111  Q
    ||||||||||||||||||| ||||||| ||| |||||||||| ||||| | || ||||       || ||||||||||| ||||||  |||||||||       
17392930 gaataagcctatattgttcaaaccatcaaattcagtagtagtgaatatcgaaactaacaaaaacaccaggtatacatctaggaactgctgagattca--- 17392834  T
112 aatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatgg 211  Q
           ||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
17392833 -------gcttacatgtgggagacattcttggacaggaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatgatgaatgg 17392741  T
212 tcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtgcataacttcaaatttt 303  Q
    ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
17392740 tcataacttgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaatttt 17392649  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 13711792 - 13711944
Alignment:
120 cttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcatatcc 219  Q
    ||||||||  ||||||||  ||||||| ||||||||||  ||||||||||| |  ||||||||||| |||||| |||||||||   |||||||||||  |    
13711792 cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccattggttttgggcgaagagtataaaaaatggtcataatc 13711891  T
220 tgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
     | ||||||||| |||||||||||||||||| ||| ||||| |||||||||||    
13711892 cgtaaaagtctctcattctgcaaaatatatgctgcaaatcggaaatcagcttc 13711944  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 272
Target Start/End: Complemental strand, 17380343 - 17380184
Alignment:
119 gcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtga--agagtatggcaaatggtcata 216  Q
    ||||||||| | | |||||||||||  | | |||||||||||||||| |||||||||||| ||||||||||||||||  |||| ||| ||||||||||||    
17380343 gcttacatgcgagggagatccttgggtagggggataaattttctaaagattgagggctcttcattggatttgggtgacgagagaatgacaaatggtcata 17380244  T
217 tcctgcaaaagtc----tcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
      ||| |||||||    || ||||||||||||||||||| | || |||||||||||||||    
17380243 atctgtaaaagtcacaatcacattctgcaaaatatatgtcgtgattcgaaaatcagcttc 17380184  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 17377688 - 17377592
Alignment:
186 atttgggtgaagagtatggcaaatggtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttca 282  Q
    ||||| ||||||| |||||  ||||| |||| | || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
17377688 atttgcgtgaagactatggtgaatggacataacttgtaaaagtctcgcatttcgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttca 17377592  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 80 - 272
Target Start/End: Original strand, 19969176 - 19969368
Alignment:
80 ggtatacatctgggaactattgagattcaaacaatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctc 179  Q
    |||||||||||  |||||| | ||||||| | |||||||||||||||| ||||||||| |||| ||| || ||||| | |||||||||||| || |||||    
19969176 ggtatacatctaagaactagtaagattcagataatgacagcttacatgcgggagagatacttgaacaggaagataagtcttctaaaaattggggactctc 19969275  T
180 cattggatttgggtgaagagtatggcaaatggtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
    || |||||||| |  |  |||||||   ||  ||||| |||  ||| |||| || |||||||||||||| ||||| |||||||||||||||||    
19969276 caatggatttgagaaactagtatggaggattttcataacctttaaatgtctagcgttctgcaaaatatacgttgcaaatcgaaaatcagcttc 19969368  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 20112274 - 20112200
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatag 285  Q
    |||||| |||| | |||||| ||||||||||||||||||||||| ||| ||||||||  |||| |||||||||||    
20112274 gtcataacctgtagaagtcttgcattctgcaaaatatatgttgcaaattgaaaatcatgttcgaaagcttcatag 20112200  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 286
Target Start/End: Original strand, 19653554 - 19653723
Alignment:
117 cagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcata 216  Q
    ||||||||| | ||| |||||  | ||||| ||||||||||  | | |||| || |||||| || |||| ||  ||| ||||||| || |||||||||||    
19653554 cagcttacacgtgggcgagattgtaggacaggaggataaatcctttgaaaaatgggggctccccgttggtttcaggtcaagagtacggaaaatggtcata 19653653  T
217 tcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagt 286  Q
     | || || |||||||||||| ||||||| |||||||  ||  |||||||||||||  ||||||||||||    
19653654 acttgtaagagtctcgcattcagcaaaatgtatgttgaaaaaagaaaatcagcttcagaagcttcatagt 19653723  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 17377727 - 17377685
Alignment:
117 cagcttacatgagggagagatccttggacaagaggataaattt 159  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
17377727 cagcttacatgtgggagagatccttggacaggaggataaattt 17377685  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 27358069 - 27358130
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
    ||||||||||| |||||||| ||||||| ||| |||||| |||| ||| |||||||||||||    
27358069 gtcatatcctgtaaaagtcttgcattcttcaagatatatattgcaaatagaaaatcagcttc 27358130  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 9619253 - 9619197
Alignment:
212 tcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcag 268  Q
    |||||||||| | ||||||||||||||| ||||||||  |||| |||||||||||||    
9619253 tcatatcctgtagaagtctcgcattctgaaaaatataccttgcaaatcgaaaatcag 9619197  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 26536314 - 26536239
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagt 286  Q
    ||||||||||| | |||||| ||||||| ||| |||||| |||| ||||||||||| |||||   |||||||||||    
26536314 gtcatatcctgtacaagtctagcattcttcaagatatatattgcaaatcgaaaatccgcttctgcagcttcatagt 26536239  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 1347601 - 1347742
Alignment:
131 gagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcatatcctgcaaaagtct 230  Q
    |||||||||| ||||| || ||||||| ||||||||| || | ||||||| ||| |  || || |  ||||||| ||||  ||||| |||| || ||| |    
1347601 gagagatcctaggacaggaagataaatcttctaaaaaatgggagctctccgttgaagctgagtaactagtatgggaaatattcataacctgtaacagttt 1347700  T
231 cgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
     ||||||| ||| ||||| ||||| ||||| |||||||||||    
1347701 tgcattcttcaatatataggttgcaaatcggaaatcagcttc 1347742  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 14308643 - 14308587
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatca 267  Q
    ||||| || |||||| |||| || |||||||||||||||||||| ||||||| ||||    
14308643 gtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatca 14308587  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 258
Target Start/End: Original strand, 32429441 - 32429469
Alignment:
230 tcgcattctgcaaaatatatgttgcgaat 258  Q
    |||||||||||||||||||||||||||||    
32429441 tcgcattctgcaaaatatatgttgcgaat 32429469  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 269
Target Start/End: Complemental strand, 15785065 - 15784913
Alignment:
117 cagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcata 216  Q
    ||||||||||| |||||||||  ||||||| |||||||| | |||||||  ||  |||||||| ||||| ||||||  ||||||| ||||||||||||||    
15785065 cagcttacatgtgggagagatttttggacaggaggataagtcttctaaattttttgggctctcaattggttttggggtaagagtacggcaaatggtcata 15784966  T
217 tcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagc 269  Q
     |||| |||||||| |||||||  ||||| || | ||||||||||||||||||    
15784965 acctgtaaaagtcttgcattctttaaaatgtaagatgcgaatcgaaaatcagc 15784913  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 26052742 - 26052814
Alignment:
231 cgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtgcataacttcaaatttt 303  Q
    |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||  |||||||||||||||    
26052742 cgcattctgcaaaatatatgttgcgaatcgaatatcagtttcacaagcttcatagtctataacttcaaatttt 26052814  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 16258080 - 16258152
Alignment:
112 aatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattg 184  Q
    |||||||| ||||||| |||||||||||||||| | ||| |||||| |||||||||||| || || |||||||    
16258080 aatgacaggttacatgcgggagagatccttggataggagaataaatcttctaaaaattggggactttccattg 16258152  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 14438256 - 14438304
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatc 259  Q
    |||||||| || ||||| |||||||||||||||||||||| ||| ||||    
14438256 gtcatatcttgtaaaagcctcgcattctgcaaaatatatgatgcaaatc 14438304  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 32224417 - 32224465
Alignment:
224 aaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||    
32224417 aaagtcttgcattctgcaaaatatatgttacaaatcgaaaatcagcttc 32224465  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 32226984 - 32226912
Alignment:
112 aatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattg 184  Q
    |||||||| |||||||  |||||||||||||||||  |||||||||  ||||||||||  || ||||||||||    
32226984 aatgacaggttacatgtcggagagatccttggacagaaggataaatcgtctaaaaatttgggactctccattg 32226912  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 24890692 - 24890631
Alignment:
210 ggtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc 272  Q
    ||||||| |||| |||||||| ||||| | |||||||||||||||||||||||| ||| ||||    
24890692 ggtcataacctgtaaaagtctagcatttt-caaaatatatgttgcgaatcgaaagtcaacttc 24890631  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 32241577 - 32241623
Alignment:
121 ttacatgagggagagatccttggacaagaggataaattttctaaaaa 167  Q
    |||||||  ||||||||||||||||| |||||||||| |||||||||    
32241577 ttacatgccggagagatccttggacaggaggataaatcttctaaaaa 32241623  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 45763906 - 45763964
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagc 269  Q
    |||||||||||||||||||| ||||||| ||||||||| |||   ||| ||||||||||    
45763906 gtcatatcctgcaaaagtctagcattcttcaaaatatacgttttaaattgaaaatcagc 45763964  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 32224305 - 32224373
Alignment:
112 aatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctcc 180  Q
    |||||||| |||||||  ||||||||||||  ||| ||||||||||  ||||||||||| || ||||||    
32224305 aatgacaggttacatgttggagagatccttccacatgaggataaatcatctaaaaattggggactctcc 32224373  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 32241772 - 32241816
Alignment:
223 aaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatca 267  Q
    |||| ||| ||||||||||||||||||||| | ||||||||||||    
32241772 aaaaatcttgcattctgcaaaatatatgttacaaatcgaaaatca 32241816  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 45763806 - 45763866
Alignment:
111 caatgacagcttacatgagggagagatccttgga-caagaggataaattttctaaaaattg 170  Q
    |||||| |||||||||| | |||||||||||||| || |||||||||| ||||||| ||||    
45763806 caatgaaagcttacatgcgagagagatccttggaccaggaggataaatcttctaaagattg 45763866  T

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Target: scaffold1377 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 1347 - 1398
Alignment:
211 gtcatatcctgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaa 262  Q
    |||||||| || ||||| |||||||||||||||||||||||||| |||||||    
1347 gtcatatcttgtaaaagcctcgcattctgcaaaatatatgttgcaaatcgaa 1398  T

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