View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_4 (Length: 660)
Name: NF17087_high_4
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 6 - 641
Target Start/End: Complemental strand, 1437265 - 1436616
Alignment:
| Q |
6 |
agtgagatgaaattgagagtcaaagatgtactacacttgtaaaatattcctgtctcaaactttaccattgtggaccacctgaaagaaacaaccttcaaat |
105 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1437265 |
agtgaaatgaaattaagagtcaaagatgtactacacttgtaaaatattcctgtctcaaactttaccattgtggaccacctgaaagaaacaaccttcaaat |
1437166 |
T |
|
| Q |
106 |
gttcacacgttaaaaaatgatagataaagcaatactttttgagaaaataaaacatcttctcaacatactaatctccattacattatgttcttcacccaaa |
205 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1437165 |
gttcacacgttaaaaa-tgatagataaagcaatactttttgagaaaataaaacatcttctcaacatactaatctccattacattatgttcttcacccaaa |
1437067 |
T |
|
| Q |
206 |
aatttcatatgtggttgtttcaaatttctgcatttttgtttccaatctcaaaatttgagagattttcgtatgtagatgtatctgttataaaattgcatat |
305 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1437066 |
aatttcat--gtggttgtttcaaatttctgcatttttgtttccaatctcaaaatttgagagattttcatatgtagatgtatctgttataaaattgcatat |
1436969 |
T |
|
| Q |
306 |
attttcataaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaacccaataaaaattccaaacattttcgtaaataatcataacctgat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436968 |
attttcataaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaacccaataaaaattccaaacattttcgtaaataatcataacctgat |
1436869 |
T |
|
| Q |
406 |
caatgacaccatgtaacgtgaagatacaagataatttcaagaagatcaa-----------------aagagatggtgaaaagcatatccacaaatcatga |
488 |
Q |
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| T |
1436868 |
caatgaccccatgtaacgtgaagatacaagataatttcaagaagatcaaaagaaaagatcaagtagaagaaatggtgaaaagcatatccacaaatcatga |
1436769 |
T |
|
| Q |
489 |
aagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatctgg |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436768 |
aagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatctgg |
1436669 |
T |
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| Q |
589 |
ctcgatatgtgaagttgaatctactactatatccgatttgcattagaagggtg |
641 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436668 |
ctcgatgtgtgaagttgaatctactactatatccgatttgcattagaagggtg |
1436616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 314 - 618
Target Start/End: Complemental strand, 1430793 - 1430473
Alignment:
| Q |
314 |
aaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaacccaataaaaattccaaacatttt-cgtaaataatcataacctgatcaatgac |
412 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||| | |||||||||||||||||||||||||| |
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| T |
1430793 |
aaagtgttggttgcttgtgtcctaagctttatcctgcaacttgacaacccagtaacaattacaaacttttttcttaaataatcataacctgatcaatgac |
1430694 |
T |
|
| Q |
413 |
accatgtaacgtgaagatacaagataatttcaagaagatcaaaaga-----------------gatggtgaaaagcatatccacaaatcatgaaagttta |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
1430693 |
--catgtaacgtgaagatacaagataatttcaagaagatcgaaagaaaagattaagtagaagagatggtgaaaagcatatgcacaaatcatgaaagttta |
1430596 |
T |
|
| Q |
496 |
tctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatctggctcgata |
595 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
1430595 |
tctctttcaggcagaggaaaaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcatctaggacctgagagttcatctggctggata |
1430496 |
T |
|
| Q |
596 |
tgtgaagttgaatctactactat |
618 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1430495 |
tgtgaagttgaatctactactat |
1430473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 455 - 613
Target Start/End: Complemental strand, 1456961 - 1456803
Alignment:
| Q |
455 |
aagagatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttc |
554 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
1456961 |
aagagatggtgaaaagcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatgtgacagaatcttc |
1456862 |
T |
|
| Q |
555 |
aaacggatcgtctaggaccttagagttcatctggctcgatatgtgaagttgaatctact |
613 |
Q |
| |
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||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
1456861 |
aaacggatcatctaggacctgatagttcatctggctcgatatgtgaagttgaatctact |
1456803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 314 - 458
Target Start/End: Complemental strand, 1443609 - 1443467
Alignment:
| Q |
314 |
aaagtgttggttgtttgtgtcctaagctttatcctgcaacttgacaacccaataaaaattccaaacat-tttcgtaaataatcataacctgatcaatgac |
412 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| || ||||| |||| |||| ||||||||||||||||||| |
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| T |
1443609 |
aaagtgttggttgcttgtgtgctacactttatcctgcaacttgacaacccaataaaa-ttacaaactgctttcttaaaaaatcataacctgatcaatgga |
1443511 |
T |
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| Q |
413 |
accatgtaacgtgaagatacaagataatttcaagaagatcaaaaga |
458 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1443510 |
--catgtaacctgaacatacaagataatttcaagaagatcaaaaga |
1443467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 518 - 618
Target Start/End: Complemental strand, 1449699 - 1449599
Alignment:
| Q |
518 |
ggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatctggctcgatatgtgaagttgaatctactacta |
617 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||| || |||||||||||||| |||||||||| |
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| T |
1449699 |
ggattgtgtattgactagtgaatatgatagaatcttcaaagggatcatctaggacccgagagttcatctgcctgaatatgtgaagttgagtctactacta |
1449600 |
T |
|
| Q |
618 |
t |
618 |
Q |
| |
|
| |
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|
| T |
1449599 |
t |
1449599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 477 - 634
Target Start/End: Complemental strand, 1442328 - 1442178
Alignment:
| Q |
477 |
cacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggacctta |
576 |
Q |
| |
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||||||||||| | ||||||||| ||||||||||||||| |||| |||||||| || |||||||||||| || ||| ||||| |||||||||| | |
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| T |
1442328 |
cacaaatcatgta-gtttatctcgttcaggcagaggaag---gattacatattcacttgtccatatgatagaatgttaaaa-ggatcatctaggacctga |
1442234 |
T |
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| Q |
577 |
gagttcatctggctcgatatgtgaagttgaatctactactatatccgatttgcattag |
634 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
1442233 |
gagttcatctggctgaatatgtgaagttgaatctactac--tatccaatttgcattag |
1442178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 1444118 - 1444082
Alignment:
| Q |
106 |
gttcacacgttaaaaaatgatagataaagcaatacttt |
143 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
1444118 |
gttcacacgttaaaaaa-gatagataaagcaatacttt |
1444082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 1457045 - 1456983
Alignment:
| Q |
387 |
taaataatcataacctgatcaatgacaccatgtaacgtgaagatacaagataatttcaagaagat |
451 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||||||||||| |
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|
| T |
1457045 |
taaaaaatcataacctgatcaatgga--catgtaacctgaacatacatgataatttcaagaagat |
1456983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 1444260 - 1444228
Alignment:
| Q |
7 |
gtgagatgaaattgagagtcaaagatgtactac |
39 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
1444260 |
gtgaaatgaaattgagagtcaaagatgtactac |
1444228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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