View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_40 (Length: 314)
Name: NF17087_high_40
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 11210905 - 11210643
Alignment:
| Q |
14 |
atattattcacatttaggaggattgatatacaagattcaacctataa-gtttaagactagtctattttaatccatcaagatgtattaatttagtaaaaa- |
111 |
Q |
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| T |
11210905 |
atattattcacatttaggaggattgatatacaagattcaacctataaagtttaagactagtctattttaatccatcaagatgtattaatttagtaaaaaa |
11210806 |
T |
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| Q |
112 |
cttattaaggtaataaagtataacataagataatttgtattgcttccatgtattagtagtatatatacttttgactacaaaataatacaaagattatcat |
211 |
Q |
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| T |
11210805 |
cttcttaaggtaataaagtataacataagataatttgtattgcttccgtgtattagta---tatatacttttgactacaaaataatacaaagattatgat |
11210709 |
T |
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| Q |
212 |
tgtgggttaacatataatgaaaatagattattttttccaggtttaatacattaatattgactacgt |
277 |
Q |
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| T |
11210708 |
tgtgggttaacatataatgaaaatagattattttttccaggtttaatacattaatattgactacgt |
11210643 |
T |
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