View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_41 (Length: 310)
Name: NF17087_high_41
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 55246580 - 55246727
Alignment:
| Q |
13 |
taaatatgacgttttgaatgtcagaaaagcaattttcccgtgagaaaccaaccatctagtggatgatgatcccaa--------ag----tat-cgttact |
99 |
Q |
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| T |
55246580 |
taaatatgacgttttgaatgtcagaaaattaattttcccatgagaaaccaaccatctagtggatgatgatcccaactttaattagaagatatccgttact |
55246679 |
T |
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| Q |
100 |
tatgtaaaaatacaaaaatctacttattttatttaaggttaaatattg |
147 |
Q |
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| T |
55246680 |
tctgtaaaaatacaaaaatctacttattttatttaaggttaaatattg |
55246727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 55246796 - 55246872
Alignment:
| Q |
216 |
tccacaatatatatttcatgtcagaaattttagtctcctttgttaaatcaatgtatgtgtatctttcaaaaataatt |
292 |
Q |
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| T |
55246796 |
tccacaatatatatttcatgtgagaaattttagtttcctttgttaaatcaatgtatgtgtatctttaaaaaaaaatt |
55246872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9041919 - 9041871
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc |
49 |
Q |
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| T |
9041919 |
catttccatgtatcaatatgacgttttgaatgtcataaaagcaaatttc |
9041871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 53687735 - 53687701
Alignment:
| Q |
15 |
aatatgacgttttgaatgtcagaaaagcaattttc |
49 |
Q |
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| T |
53687735 |
aatatgacgttttgaatgtcagaaaagtaattttc |
53687701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 55246019 - 55245971
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc |
49 |
Q |
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||||||||||| | |||||||||||||||| |||| |||| |||||||| |
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| T |
55246019 |
catttccatgtgtcaatatgacgttttgaacgtcaaaaaaacaattttc |
55245971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4996464 - 4996420
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaat |
45 |
Q |
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| T |
4996464 |
cattttcatgtgtcaatatgacgttttgaatgtcagaaaagcaat |
4996420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4997179 - 4997227
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc |
49 |
Q |
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||||||||||| | ||||||| ||||||||||||| ||||||||||||| |
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| T |
4997179 |
catttccatgtgtcaatatgaagttttgaatgtcaaaaaagcaattttc |
4997227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48850528 - 48850480
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc |
49 |
Q |
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| T |
48850528 |
cattttcatgtgtcaatataacgttttgaatgtcagaaatgcaattttc |
48850480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1634949 - 1634993
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaat |
45 |
Q |
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| T |
1634949 |
catttccatgtgtcaatataacgttttgaatgtcagaaaagcaat |
1634993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38052628 - 38052580
Alignment:
| Q |
1 |
catttccatgtataaatatgacgttttgaatgtcagaaaagcaattttc |
49 |
Q |
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||||||||| | | ||||||||||||| ||||||||||||||||||||| |
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| T |
38052628 |
catttccatatgttaatatgacgttttcaatgtcagaaaagcaattttc |
38052580 |
T |
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