View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_54 (Length: 255)
Name: NF17087_high_54
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16954346 - 16954585
Alignment:
| Q |
1 |
ttatttgcaacataatggaatttcgaccataattaaaaacctttgtttgcaatctttaaattgcttcaaattacattgatatgcttaattatttgttatt |
100 |
Q |
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| T |
16954346 |
ttatttgcaacataatggaatttcgaccataattaaaaacctttgtttgcaatctttaaattgcttcaaattacattgatatgcttaattatttgttatt |
16954445 |
T |
|
| Q |
101 |
gttgttaatatatttaaaatagtcacgagatcaacatatgaaaaactaaagcctctattattgttctgaaacaatggtagacctcatagactgacatcta |
200 |
Q |
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| T |
16954446 |
gttgttaatatatttaaaatagtcacgagatcaacatatgaaaaactaaagcctctattattgttctgaaacaatggtagacctcatagactgacatcta |
16954545 |
T |
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| Q |
201 |
atatacaacatgtttcatttgaattgttatctgatataac |
240 |
Q |
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| T |
16954546 |
atatacaacatgtttcatttgaattgttatctgatataac |
16954585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 17023937 - 17024090
Alignment:
| Q |
1 |
ttatttgcaacataatggaatttcgaccataattaaaaacctttgtttgcaatctttaaattgcttcaaattacattgatatgcttaattatttgttatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17023937 |
ttatttgcaacataatggaatttcgaccataattaaaaacctttgtttgcaatctttaaattgcttcaaattacattgatatgcttaattatttgttatt |
17024036 |
T |
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| Q |
101 |
gttgttaatatatttaaaatagtcacgagatcaacatatgaaaaactaaagcct |
154 |
Q |
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| T |
17024037 |
gttgttaatatatttaaaatagtcacgagatcaacatatgaaaaactaaagcct |
17024090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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