View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_55 (Length: 253)
Name: NF17087_high_55
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_55 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 38184521 - 38184755
Alignment:
| Q |
19 |
tcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacccc |
118 |
Q |
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| T |
38184521 |
tcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacatc |
38184620 |
T |
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| Q |
119 |
gacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaaca |
218 |
Q |
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| T |
38184621 |
gacaacaccaccaccagacgaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaaca |
38184720 |
T |
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| Q |
219 |
tcaacggcttttagtgcctctaattcaaactcttc |
253 |
Q |
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| T |
38184721 |
tcaacggcttttagtgcctctaattcaaactcttc |
38184755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 38179854 - 38180086
Alignment:
| Q |
21 |
ttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccga |
120 |
Q |
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| T |
38179854 |
ttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacaccga |
38179953 |
T |
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| Q |
121 |
caacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatc |
220 |
Q |
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| T |
38179954 |
caacaccaccactagacgaagtatcattaggatctttaccgcccaagaaagtatatggaatcaatggtccgattggtatcattttgatcttaccaacgtc |
38180053 |
T |
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| Q |
221 |
aacggcttttagtgcctctaattcaaactcttc |
253 |
Q |
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| T |
38180054 |
aacggcttttagtgcctctaattcaaactcttc |
38180086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 38170043 - 38170242
Alignment:
| Q |
24 |
gacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaa |
123 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||| ||| | ||| ||||| | ||||| |
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| T |
38170043 |
gacaaaacagcaagagtaccaaatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaa |
38170142 |
T |
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| Q |
124 |
caccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaac |
223 |
Q |
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| T |
38170143 |
cgtcaccaccaaacgaattatccgtaggatccttgccatccaagaaagcagatggaatcaacggtccgatgggtatcattttgatcttaccaacatcaac |
38170242 |
T |
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