View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_high_57 (Length: 249)
Name: NF17087_high_57
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_high_57 |
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| [»] scaffold0002 (3 HSPs) |
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| [»] scaffold0351 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6294876 - 6294640
Alignment:
| Q |
1 |
atttgaagacattaaaattagagatcatctcaattataatacgttcatcatatactttttaatatggaactcttactcacagttgatatactaacatata |
100 |
Q |
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| T |
6294876 |
atttgaagacattaaaattagagatcatctcaattataatacgttcatcatacactttttaatatggaactcttactcacagttgatatactaacatata |
6294777 |
T |
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| Q |
101 |
attcatacctcaacaactaataataaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaacacggaaaatcttatatgaataag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
6294776 |
attcatacctcaacaactaataataaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaacgcggcaaatcttatatgaataaa |
6294677 |
T |
|
| Q |
201 |
gatcttgaattatatacacacacactctttatgacat |
237 |
Q |
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| T |
6294676 |
gatcttgaattatatatacacacactctttatgacat |
6294640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 6281293 - 6281162
Alignment:
| Q |
6 |
aagacattaaaattagagatcatctcaattataatacgttcatcatatactttttaatatggaactcttactcacagttgatatactaacatataattca |
105 |
Q |
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||||||||||||||| | |||||||||||||||| ||||||||| || ||||||||| ||||||||||||| | ||||||||| ||||||||| ||| |
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| T |
6281293 |
aagacattaaaattatatatcatctcaattataacgtgttcatcatccacattttaatatagaactcttactcatacttgatataccaacatataactca |
6281194 |
T |
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| Q |
106 |
tacctcaac-aactaataataaacttatgagtca |
138 |
Q |
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| T |
6281193 |
tacctcaacaaacta--aataaacttatgagtca |
6281162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 6281146 - 6281062
Alignment:
| Q |
124 |
taaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaacacggaaaatcttatatgaataaggatcttga |
208 |
Q |
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| T |
6281146 |
taaacttatgactcatacaagtaaacttaactaagaagtaactaaaactaaaacacggcaaatctgatatgaagaaggatcttga |
6281062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 452139 - 452200
Alignment:
| Q |
115 |
aactaataataaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaa |
176 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
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| T |
452139 |
aactcataataaacttatgagtcaaacaattaaacttaactaagaagtaggtcaaactacaa |
452200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 113329 - 113245
Alignment:
| Q |
115 |
aactaataataaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaacacggaaaatcttatatgaataa |
199 |
Q |
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| T |
113329 |
aactaataataaacttatgagtcaaagaattaaacttaacaatgaaataactcgaactacaacgcagcaaatctgatatgaataa |
113245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 116937 - 116853
Alignment:
| Q |
115 |
aactaataataaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaacacggaaaatcttatatgaataa |
199 |
Q |
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|||||| ||||||||||||||||||| || |||||||||| | ||| ||||| ||||||||| | | |||||| |||||||||| |
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| T |
116937 |
aactaacaataaacttatgagtcaaaaaattaaacttaacaatgaaataactcgaactacaacgctgcaaatctgatatgaataa |
116853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 8303 - 8387
Alignment:
| Q |
115 |
aactaataataaacttatgagtcaaacaagtaaacttaactaagaagtaactaaaactacaacacggaaaatcttatatgaataa |
199 |
Q |
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||||||||||||||||||||||||| || |||||||||| | ||| | ||| ||||||| | |||||||||| |||||||||| |
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| T |
8303 |
aactaataataaacttatgagtcaataaattaaacttaacaatgaaattactcgaactacagcgcggaaaatctgatatgaataa |
8387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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