View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_high_61 (Length: 244)

Name: NF17087_high_61
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_high_61
NF17087_high_61
[»] chr4 (2 HSPs)
chr4 (1-225)||(23253257-23253481)
chr4 (114-150)||(4790780-4790816)
[»] chr1 (2 HSPs)
chr1 (110-145)||(5243302-5243337)
chr1 (111-150)||(51603400-51603439)
[»] chr5 (2 HSPs)
chr5 (111-145)||(35053683-35053717)
chr5 (111-145)||(35070000-35070034)
[»] chr7 (1 HSPs)
chr7 (114-150)||(5409083-5409119)
[»] chr3 (5 HSPs)
chr3 (153-185)||(47542567-47542599)
chr3 (153-185)||(47542786-47542818)
chr3 (153-185)||(47543005-47543037)
chr3 (153-185)||(47556233-47556265)
chr3 (153-185)||(47556452-47556484)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23253481 - 23253257
Alignment:
Q  1 ttaatatcttattatgtcttcctagggttttgcattgcattttggaagtaaatgtgtttgcatatggcatttatgcacgatttttcgaatacttatgatg 100  Q
    |||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23253481 ttaatatcttattatgccttcctaggattttgcatggcattttagaagtaaatgtgtttgcatatggcatttatgcacgatttttcgaatacttatgatg 23253382  T
Q  101 tgtgtatacgctatgtagcaccgacacttctgatggaaggtgtgttcggttttgacacaacaccgacacatttgattacattcaannnnnnnaaattttg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  23253381 tgtgtatacgccatgtagcaccgacacttctgatggaaggtgtgttcggttttgacacaacaccgacacatttgattacattcaatttttttaaattttg 23253282  T
Q  201 tgtcgatgtgtccgtgtcatgtctg 225  Q
    |||||| ||||||||||||||||||    
T  23253281 tgtcgacgtgtccgtgtcatgtctg 23253257  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 4790816 - 4790780
Alignment:
Q  114 tgtagcaccgacacttctgatggaaggtgtgttcggt 150  Q
    ||||||||||||||||||||| |||||||||||||||    
T  4790816 tgtagcaccgacacttctgattgaaggtgtgttcggt 4790780  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 5243337 - 5243302
Alignment:
Q  110 gctatgtagcaccgacacttctgatggaaggtgtgt 145  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5243337 gctatgtagcaccgacacttctgattgaaggtgtgt 5243302  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 51603400 - 51603439
Alignment:
Q  111 ctatgtagcaccgacacttctgatggaaggtgtgttcggt 150  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  51603400 ctatgtagcaccgacacatctgatcgaaggtgtgttcggt 51603439  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 35053683 - 35053717
Alignment:
Q  111 ctatgtagcaccgacacttctgatggaaggtgtgt 145  Q
    |||||||||||||||||||||||| ||||||||||    
T  35053683 ctatgtagcaccgacacttctgattgaaggtgtgt 35053717  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 35070000 - 35070034
Alignment:
Q  111 ctatgtagcaccgacacttctgatggaaggtgtgt 145  Q
    |||||||||||||||||||||||| ||||||||||    
T  35070000 ctatgtagcaccgacacttctgattgaaggtgtgt 35070034  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 5409083 - 5409119
Alignment:
Q  114 tgtagcaccgacacttctgatggaaggtgtgttcggt 150  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  5409083 tgtagcaccgaaacttctgatggaaggtgtgtccggt 5409119  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 47542599 - 47542567
Alignment:
Q  153 tgacacaacaccgacacatttgattacattcaa 185  Q
    ||||||||||||||||||| |||||||||||||    
T  47542599 tgacacaacaccgacacatgtgattacattcaa 47542567  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 47542818 - 47542786
Alignment:
Q  153 tgacacaacaccgacacatttgattacattcaa 185  Q
    ||||||||||||||||||| |||||||||||||    
T  47542818 tgacacaacaccgacacatgtgattacattcaa 47542786  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 47543037 - 47543005
Alignment:
Q  153 tgacacaacaccgacacatttgattacattcaa 185  Q
    ||||||||||||||||||| |||||||||||||    
T  47543037 tgacacaacaccgacacatgtgattacattcaa 47543005  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 47556265 - 47556233
Alignment:
Q  153 tgacacaacaccgacacatttgattacattcaa 185  Q
    ||||||||||||||||||| |||||||||||||    
T  47556265 tgacacaacaccgacacatgtgattacattcaa 47556233  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 47556484 - 47556452
Alignment:
Q  153 tgacacaacaccgacacatttgattacattcaa 185  Q
    ||||||||||||||||||| |||||||||||||    
T  47556484 tgacacaacaccgacacatgtgattacattcaa 47556452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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