View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_10 (Length: 442)
Name: NF17087_low_10
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 40457053 - 40456640
Alignment:
| Q |
1 |
cgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaattaaaggtattat |
100 |
Q |
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| T |
40457053 |
cgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaattaaaggtattat |
40456954 |
T |
|
| Q |
101 |
gtgttgaagttcagtttttgtttattttgattcagaatcttgttttattaaagatcaagttatgaaataaatttgattcatagaatgaagtaaaagttat |
200 |
Q |
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| T |
40456953 |
gtgttgaagttcagtttttgtttattttgattcagaatcttattttattaaagatcaagttatgaaataaatttgattcatagaatgaagtaaaagttgt |
40456854 |
T |
|
| Q |
201 |
agtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaat |
300 |
Q |
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| T |
40456853 |
agtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaat |
40456754 |
T |
|
| Q |
301 |
gacaacaagaaggaatcttagggtcagaattccatctctttgctggttatttctgtacatatgtggtttgtaagtggttgaatttggatgtttactttct |
400 |
Q |
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| T |
40456753 |
gacaacaagaaggaatcttagggtcagaattccatctctttgctggttatttctgtatatatgtggtttgtaagtggttgaatttggatgtttactttct |
40456654 |
T |
|
| Q |
401 |
cttgccagtagatt |
414 |
Q |
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| T |
40456653 |
cttgccagtagatt |
40456640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 40362819 - 40363005
Alignment:
| Q |
136 |
aatcttgttttattaaagatcaagttatgaaataaa-tttgattcatagaatgaagtaaaagt--tatagtgtttttgtaggcacgaatatgaattcata |
232 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| | | | ||| |||||||||||||||||||||| |||| |
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| T |
40362819 |
aatcttgttttattaaagatcaagttatgtaataaaatttgattaatagaatgaagtaaaaatggtgttgtgcttttgtaggcacgaatatgaatccata |
40362918 |
T |
|
| Q |
233 |
aagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatctt |
319 |
Q |
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| T |
40362919 |
aaaaagatagtggaaagggccattgaagctaaatatcaaatgtgataccaattagtccttgcacaaatgataactagaagaaatctt |
40363005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 193 - 304
Target Start/End: Original strand, 40409589 - 40409700
Alignment:
| Q |
193 |
aaagttatagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtcctt |
292 |
Q |
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|||||| ||| | ||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
40409589 |
aaagttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaagctgaaaatcacatgtgataccaataagtccat |
40409688 |
T |
|
| Q |
293 |
gaacaaatgaca |
304 |
Q |
| |
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| | |||||||| |
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|
| T |
40409689 |
gcagaaatgaca |
40409700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 40482148 - 40482086
Alignment:
| Q |
352 |
tctgtacatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
414 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482148 |
tctgtatatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
40482086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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