View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_13 (Length: 432)
Name: NF17087_low_13
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 17356214 - 17356630
Alignment:
| Q |
1 |
gttttctatttatcttaagaaatgtctttttcctaaggatacgtgacaaaatttcacacatttgtttagccgtgttcctggactagcttttaggaatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17356214 |
gttttctatttatcttaagaaatgtctttttcctaaggatacgtgacaaaatttcacacatttgtttagccgtgttcctggactagcttttaggaatcaa |
17356313 |
T |
|
| Q |
101 |
cgtccctatttagagctacaacaattggaacttcttacactgtcatcaacagaaatacagacacaattctaccaggttaatacttgttgtcctaatagaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17356314 |
cgtccctacttagagctacaacaattggaacttcttacactgtcatcaacagaaatacagacacaattctaccaggttaatacttgttgtcctaatagaa |
17356413 |
T |
|
| Q |
201 |
gaaaattattta--acacagtatatattatggttattttgctaaggtagcatgtttttgtttttacaggaagcaaggattaaggtttgtttgttgtccaa |
298 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17356414 |
gaaaattatttaccacaaagtatatattatggttattttgctaaggtagcatgtttttgtttttacaggaagcaaggattaaggtttgtttgttgtccaa |
17356513 |
T |
|
| Q |
299 |
gaaactgaaaattctctatatatatatttgtatttcatagcttatgatgaaccaaaatcctacaatactatatgtattttccnnnnnnnncttttcagac |
398 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17356514 |
gaaactgaaaattctc--tatatatatttgtatttcatagcttatgatgaaccaaaatcctacaatactatatgtattttccttttttttcttttcagac |
17356611 |
T |
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| Q |
399 |
tgttgttttcatggggtgc |
417 |
Q |
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||||||||||||||||||| |
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| T |
17356612 |
tgttgttttcatggggtgc |
17356630 |
T |
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