View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_14 (Length: 429)

Name: NF17087_low_14
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_14
NF17087_low_14
[»] chr4 (4 HSPs)
chr4 (12-429)||(55245894-55246314)
chr4 (277-352)||(9041871-9041948)
chr4 (292-353)||(53896779-53896840)
chr4 (277-354)||(53687699-53687778)
[»] chr3 (3 HSPs)
chr3 (161-263)||(48846854-48846959)
chr3 (294-354)||(45244100-45244160)
chr3 (293-352)||(38052580-38052639)
[»] chr6 (5 HSPs)
chr6 (161-237)||(1634599-1634675)
chr6 (277-354)||(19802530-19802609)
chr6 (278-338)||(4222778-4222839)
chr6 (292-348)||(1634937-1634993)
chr6 (281-354)||(4221595-4221669)
[»] chr7 (4 HSPs)
chr7 (278-352)||(4997151-4997227)
chr7 (277-354)||(4996414-4996492)
chr7 (277-343)||(33223198-33223266)
chr7 (295-356)||(48850476-48850537)
[»] chr1 (2 HSPs)
chr1 (292-353)||(31868332-31868393)
chr1 (295-351)||(37560773-37560829)
[»] chr8 (2 HSPs)
chr8 (277-352)||(44007549-44007626)
chr8 (277-338)||(44006396-44006459)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 55246314 - 55245894
Alignment:
Q  12 atcatcattatccttatcaacaaccttttaatttctcagatctaaacaaacctcnnnnnnntctacaattattggaccnnnnnnnn--acaacatttcta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||          ||||||||||||    
T  55246314 atcatcattatccttatcaacaaccttttaatttctcagatctaaacaaacctcaaaaaaatctacaattattggaccttttttttttacaacatttcta 55246215  T
Q  110 tccttggacttcattgcagaaccnnnnnnnnacaacatttctacaattattacccatttgataaagttttgattttgacaaaattggttggtcctccatg 209  Q
    |||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55246214 tccttggacttcatcgcagaaccttttttttacaacatttctacaattattacccatttgataaagttttgattttgacaaaattggttggtcctccatg 55246115  T
Q  210 attggtaagaacatagaaatgagtatgagtcaaagtatagcagaatgacataccttgctacgaccgatagttaactaccgccgg-gtaaaaacgtcattt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||  | | |||||||||||| | |  |||||||||||||||    
T  55246114 attggtaagaacatagaaatgagtatgagtcaaagtatagcagaatgatatactttgctactgctggtagttaactaccactgaagtaaaaacgtcattt 55246015  T
Q  309 ccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttcttctcacgggcctgcttatctatccattgagtcccaaccaaaccaagagagcccag 408  Q
    ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55246014 ccatgtgtcaatatgacgttttgaacgtcaaaaaaacaattttcttctcacgggcctgcttatctatccattgagtcccaaccaaaccaagagagcccag 55245915  T
Q  409 acacagagtatgagtcagatc 429  Q
    |||||||||||||||||||||    
T  55245914 acacagagtatgagtcagatc 55245894  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 9041948 - 9041871
Alignment:
Q  277 tagttaactaccgccgg--gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttc 352  Q
    ||||||||||||||| |  |||||||||||||||||| || |||||||||||||||||| |||| |||||||| ||||    
T  9041948 tagttaactaccgcccgaggtaaaaacgtcatttccatgtatcaatatgacgttttgaatgtcataaaagcaaatttc 9041871  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 53896779 - 53896840
Alignment:
Q  292 gggtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttct 353  Q
    |||||||||||||||||||| |||||| ||||| | |||| | |||| ||||||||||||||    
T  53896779 gggtaaaaacgtcatttccatgtgtcattatgaagctttgtatgtcagaaaagcaattttct 53896840  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 53687778 - 53687699
Alignment:
Q  277 tagttaactaccgccggg--taaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttctt 354  Q
    |||||||||||||| ||   |||||| |||||||  | ||||||||||||||||||||| |||| ||||| |||||||||    
T  53687778 tagttaactaccgctggagataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtcagaaaagtaattttctt 53687699  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 48846854 - 48846959
Alignment:
Q  161 acccatttgataaagttttgattttgacaaaattggt---tggtcctccatgattggtaagaacatagaaatgagtatgagtcaaagtatagcagaatga 257  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  48846854 acccatttgataaagttttgattttgacaaaattggtggttggtcctccatgattggtgagaacatagaaattagtatcagtcaaagtatagcagaatga 48846953  T
Q  258 catacc 263  Q
    ||||||    
T  48846954 catacc 48846959  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 45244100 - 45244160
Alignment:
Q  294 gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttctt 354  Q
    ||||||| ||||||| || |||||||||||| |||||||| ||| ||||| ||||||||||    
T  45244100 gtaaaaatgtcatttacaagtgtcaatatgaagttttgaatgtctaaaaaccaattttctt 45244160  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 38052639 - 38052580
Alignment:
Q  293 ggtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttc 352  Q
    |||||||| ||||||||||  ||| ||||||||||||| || |||| |||||||||||||    
T  38052639 ggtaaaaatgtcatttccatatgttaatatgacgttttcaatgtcagaaaagcaattttc 38052580  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 1634675 - 1634599
Alignment:
Q  161 acccatttgataaagttttgattttgacaaaattggttggtcctccatgattggtaagaacatagaaatgagtatga 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1634675 acccatttgataaagttttgattttgacaaaattggttggtcctccatgattggtgagaacatagaaatgagtatga 1634599  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 19802609 - 19802530
Alignment:
Q  277 tagttaactaccgccgg--gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttctt 354  Q
    |||||||||||||||||  |||||||| |||||| || |||||||||||| |||||||| |||||||||| |||||||||    
T  19802609 tagttaactaccgccggaggtaaaaacatcattttcatgtgtcaatatgatgttttgaatgtcaaaaaagtaattttctt 19802530  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 4222778 - 4222839
Alignment:
Q  278 agttaactaccgccggg-taaaaacgtcatttccacgtgtcaatatgacgttttgaaggtca 338  Q
    ||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||    
T  4222778 agttaactaccgctggggtaaaaacgtcattttcatgtgtcaatatgacgttttgaaggtca 4222839  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 1634937 - 1634993
Alignment:
Q  292 gggtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaat 348  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||| |||||||||    
T  1634937 gggtaaaaacgtcatttccatgtgtcaatataacgttttgaatgtcagaaaagcaat 1634993  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 4221669 - 4221595
Alignment:
Q  281 taactaccgccgg-gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttctt 354  Q
    |||||||||| || ||||||||||||||| || ||||||||||||| |||||||||| | ||||||||| |||||    
T  4221669 taactaccgctggagtaaaaacgtcattttcatgtgtcaatatgacattttgaaggttagaaaagcaatcttctt 4221595  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 4997151 - 4997227
Alignment:
Q  278 agttaactaccgccgg--gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttc 352  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||    
T  4997151 agttaactaccgccggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgtcaaaaaagcaattttc 4997227  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 4996492 - 4996414
Alignment:
Q  277 tagttaactaccgccgg-gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttctt 354  Q
    ||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||| |||| ||||||||| |||||    
T  4996492 tagttaactaccgccagagtaaaaacgtcattttcatgtgtcaatatgacgttttgaatgtcagaaaagcaatcttctt 4996414  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 33223198 - 33223266
Alignment:
Q  277 tagttaactaccgccgg--gtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaa 343  Q
    ||||||||||||| |||  || |||| |||||||| | ||||||||||||||||||||| |||||||||    
T  33223198 tagttaactaccgtcggaggttaaaatgtcatttctatgtgtcaatatgacgttttgaatgtcaaaaaa 33223266  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 48850537 - 48850476
Alignment:
Q  295 taaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttcttct 356  Q
    |||||| ||||||| || |||||||||| |||||||||| |||| ||| |||||||||||||    
T  48850537 taaaaatgtcattttcatgtgtcaatataacgttttgaatgtcagaaatgcaattttcttct 48850476  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 31868393 - 31868332
Alignment:
Q  292 gggtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttct 353  Q
    ||||||||||||||||| || ||||||| |||||||||||||  ||||||||||||||||||    
T  31868393 gggtaaaaacgtcattttcatgtgtcaacatgacgttttgaatatcaaaaaagcaattttct 31868332  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 37560773 - 37560829
Alignment:
Q  295 taaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaatttt 351  Q
    |||||| |||||||| |  |||||||||||||||||||| |||||||||| ||||||    
T  37560773 taaaaatgtcatttcaatatgtcaatatgacgttttgaatgtcaaaaaagtaatttt 37560829  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 44007549 - 44007626
Alignment:
Q  277 tagttaactaccgccggg--taaaaacgtcatttccacgtgtcaatatgacgttttgaaggtcaaaaaagcaattttc 352  Q
    |||||||||||||| | |  ||||||||||||||| |  ||||||||||| |||||||| ||||||||| ||||||||    
T  44007549 tagttaactaccgctgaggataaaaacgtcatttctatatgtcaatatgatgttttgaatgtcaaaaaaacaattttc 44007626  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 44006459 - 44006396
Alignment:
Q  277 tagttaactaccgccg--ggtaaaaacgtcatttccacgtgtcaatatgacgttttgaaggtca 338  Q
    ||||||||||||||||  | |||||||||||||| ||  ||||||||||| |||||||| ||||    
T  44006459 tagttaactaccgccgaagataaaaacgtcattttcatatgtcaatatgaagttttgaatgtca 44006396  T

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