View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_16 (Length: 410)
Name: NF17087_low_16
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 27499730 - 27500132
Alignment:
| Q |
6 |
agacttatagagagaggcttatggtcgacatatatatgcttataagcttatagatgtgtattgagaaattatataatacagcttctaataaaaaactgaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27499730 |
agacttatagagagaggcttatggtcgacatatatatgcttataagcttatagatgtgtattgagaaattatataatacagcttctaa---aaaactgaa |
27499826 |
T |
|
| Q |
106 |
ctttagaatcaaatttcaacatatatgagaagctcttgcttaaacaaatgcttaattatttattataagattattttgatctctctttttatcataagca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499827 |
ctttagaatcaaatttcaacatatatgagaagctcttgcttaaacaaatgcttaattatttattataagattattttgatctctctttttatcataagca |
27499926 |
T |
|
| Q |
206 |
ttcatagagaattttatcaaactgattcttaatccatacggagttatttcttt----------ccttgtgtatgcaacatgcatttatactcttccttgt |
295 |
Q |
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| T |
27499927 |
ttcatagagaattttatcaaactgattcttaatctgtatggagttatttccttcaagcaaacacactatgtatgcaacatgcatttatactcttccttgt |
27500026 |
T |
|
| Q |
296 |
ctgttcgta------acatttaagttaagtaataaagtgaagctctatgattactgttgtagttaaacagtcctgatctctttgatatgtattctgctgg |
389 |
Q |
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| T |
27500027 |
ctgtttcaaatatatatatatatatttagtaataaagtgaagctctgtgattactgttgcagttaaacagtcctgatctctttgatatgtattctgctgg |
27500126 |
T |
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| Q |
390 |
aattgt |
395 |
Q |
| |
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|||||| |
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| T |
27500127 |
aattgt |
27500132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 27514522 - 27514924
Alignment:
| Q |
6 |
agacttatagagagaggcttatggtcgacatatatatgcttataagcttatagatgtgtattgagaaattatataatacagcttctaataaaaaactgaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27514522 |
agacttatagagagaggcttatggtcgacatatatatgcttataagcttatagatgtgtattgagaaattatataatacagcttctaa---aaaactgaa |
27514618 |
T |
|
| Q |
106 |
ctttagaatcaaatttcaacatatatgagaagctcttgcttaaacaaatgcttaattatttattataagattattttgatctctctttttatcataagca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514619 |
ctttagaatcaaatttcaacatatatgagaagctcttgcttaaacaaatgcttaattatttattataagattattttgatctctctttttatcataagca |
27514718 |
T |
|
| Q |
206 |
ttcatagagaattttatcaaactgattcttaatccatacggagttatttcttt----------ccttgtgtatgcaacatgcatttatactcttccttgt |
295 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||| || | | |||||||||||||||||||||||||||||||| |
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| T |
27514719 |
ttcatagagaattttatcaaactgattcttaatctgtatggagttatttccttcaagcaaacacactatgtatgcaacatgcatttatactcttccttgt |
27514818 |
T |
|
| Q |
296 |
ctgttcgta------acatttaagttaagtaataaagtgaagctctatgattactgttgtagttaaacagtcctgatctctttgatatgtattctgctgg |
389 |
Q |
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| T |
27514819 |
ctgtttcaaatatatatatatatatttagtaataaagtgaagctctgtgattactgttgcagttaaacagtcctgatctctttgatatgtattctgctgg |
27514918 |
T |
|
| Q |
390 |
aattgt |
395 |
Q |
| |
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|||||| |
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| T |
27514919 |
aattgt |
27514924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 41 - 395
Target Start/End: Original strand, 27493108 - 27493474
Alignment:
| Q |
41 |
atgcttataagcttatagatgtgtattgagaaattatataatacagcttctaataaaaaactgaactttagaatcaaatttcaacatatatgagaagctc |
140 |
Q |
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||||||||| |||||||||||| ||||||||||||| |||||||||||||| | |||||| |||| ||||| ||||| |||||||| |||||||||| |
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| T |
27493108 |
atgcttataggcttatagatgtttattgagaaattaaataatacagcttctga---aaaacttaactgtagaagcaaatatcaacataagtgagaagctc |
27493204 |
T |
|
| Q |
141 |
ttgcttaaacaaatgcttaattatttattataagattattttgatctctctttttatcataagcattcatagagaattttatcaaactgattcttaatcc |
240 |
Q |
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||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27493205 |
ttgcttaaaaaaa-gcctaattatttattataagattaatttgatctctctttttatcataagcattcctagagaattttatcaaactgattcttaatct |
27493303 |
T |
|
| Q |
241 |
atacggagttatttcttt----------ccttgtgtatgcaacatgcatttatactcttccttgtctgttcgta------acatttaagttaagtaataa |
324 |
Q |
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|| ||||||||||| || | | ||||||||||||||||||||||||||||||||||||| | | || || || |||||||| |
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| T |
27493304 |
gtatggagttatttccttcaagcaaacacactatgtatgcaacatgcatttatactcttccttgtctgtttcaaatatatatatatatatttagtaataa |
27493403 |
T |
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| Q |
325 |
agtgaagctctatgattactgttgtagttaaacagtcctgatctctttgatatgtattctgctggaattgt |
395 |
Q |
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| T |
27493404 |
agtgaagctctgtgattactgttgcagttaaacagtcctgatctctttgatatgtattctgctggaattgt |
27493474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 27495913 - 27496009
Alignment:
| Q |
268 |
tgcaacatgcatttatactcttccttgtctgttcgtaacatttaagttaagtaataaagtgaagctctatgattactgttgtagttaaacagtcctg |
364 |
Q |
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|||||||||||||||| |||||| ||||||| | | || || |||||||||| |||| || ||| |||||||||||| ||||||||| ||||| |
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| T |
27495913 |
tgcaacatgcatttatgctcttctttgtctgattggaatatgcaagttaagtactaaaacagagatctgtgattactgttgcagttaaacattcctg |
27496009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 27502571 - 27502667
Alignment:
| Q |
268 |
tgcaacatgcatttatactcttccttgtctgttcgtaacatttaagttaagtaataaagtgaagctctatgattactgttgtagttaaacagtcctg |
364 |
Q |
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|||||||||||||||| |||||| ||||||| | | || || |||||||||| |||| || ||| |||||||||||| ||||||||| ||||| |
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| T |
27502571 |
tgcaacatgcatttatgctcttctttgtctgattggaatatgcaagttaagtactaaaacagagatctgtgattactgttgcagttaaacattcctg |
27502667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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