View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_2 (Length: 802)
Name: NF17087_low_2
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 94 - 785
Target Start/End: Original strand, 63198 - 63893
Alignment:
| Q |
94 |
attaatcacaagtagtcaaaacttgatgtgaaaatgca----aaaagtaaatatggcgtttaataaagaacaaaaattggtgcatagacgaaatggtaaa |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
63198 |
attaatcacaagtagtcaaaacttgatgtgaaaatgcattcaagaagtaaatatggcgtttaatgaagaacacaaattggtgcatagacgaaatggtaaa |
63297 |
T |
|
| Q |
190 |
caaccattgaaactcacacacacaagtgaataaacctagattcaaaccccaattacggtattcaatttagcaatttcaacatttttatcagttgagtcag |
289 |
Q |
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|||||||||||||||| ||| | |||| |||||||||||||| ||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
63298 |
caaccattgaaactcatacata--agtggataaacctagattcgaactccaattatggtatctaatctagcaatttcaacatttttatcagttgagtcag |
63395 |
T |
|
| Q |
290 |
aacttatggacaatggtatggaccaactacgagcgtgacaagccaagacccaataaaaactggcccacaatggcgatggaccaagctaagcttcttgtgc |
389 |
Q |
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|||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
63396 |
aacttatggatagtggtatggaccaattacgagcgcgacaagccaagacccaataaagactggcccacaatggcgatggaccaggctaagcttcgtgtgc |
63495 |
T |
|
| Q |
390 |
ggcaccgcatgagagcaccctcgggtccacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatg |
489 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |
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| T |
63496 |
agcaccgcacgagagcaccctcgggtccacttttacctcatttcgcacatattcaccttattctcttacgggcttgagcgtcagagtactaacgtatatg |
63595 |
T |
|
| Q |
490 |
caggcacaattctcctctgtcgtgaagaccaccgcaaaggatcaaactccactgcgacagatcaccaaacacaagtgcatcttttctcaattttcattgg |
589 |
Q |
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| T |
63596 |
cagacacaattctcctccgtcgtgaagaccaccgcaaaggatcaacctccactgcgacagatcaccaaacacaagcgcatcttttctcaatcttcattgg |
63695 |
T |
|
| Q |
590 |
acagatcagacacatttcatgaaaatttgatcaaatgtttcttatcatacttttaatgctactcacctccctatatcatacaaacaatctccttgtc--n |
687 |
Q |
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| T |
63696 |
acagatcagacatatttcatgaaaatttgatcaaatgtttcttatcatacttttaatgctactgacctccctatatcatacaaacaatctccttgtcaaa |
63795 |
T |
|
| Q |
688 |
nnnnnnnncatacaaacaatctcaattgactcaccaactcatatcttaaataggagtacccatgtctggcctgtggattaagattcatgcctgtatat |
785 |
Q |
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| T |
63796 |
aaaaaaaacatacaaacaatctcaattgactcaccaactcatatcttaaataggagtacccatgtctggcctttggattaagattcatgcctgtatat |
63893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 515
Target Start/End: Original strand, 31696830 - 31696928
Alignment:
| Q |
417 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaa |
515 |
Q |
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| T |
31696830 |
cacttttaccacatttcacacatatccacctcattctcataccaacttgagtttcggagtgctaacatgcatgtagacacaattctcctctgtcgtgaa |
31696928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 63157 - 63186
Alignment:
| Q |
16 |
aatattgaatggtgtgctattcatcacata |
45 |
Q |
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| T |
63157 |
aatattgaatggtgtgctattcatcacata |
63186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 534
Target Start/End: Complemental strand, 34954930 - 34954814
Alignment:
| Q |
418 |
acttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaaga |
517 |
Q |
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||||||||| |||||| ||||||| ||||| |||||| || || || ||| | || | |||||||| ||||| | |||||||||||| |||| |||| |
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| T |
34954930 |
acttttaccacatttcacacatatccacctcattctcatagtgaattgagcgttggattgctaacgtacatgcaagtacaattctcctccatcgtaaaga |
34954831 |
T |
|
| Q |
518 |
ccaccgcaaaggatcaa |
534 |
Q |
| |
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||||||||||||||||| |
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| T |
34954830 |
ccaccgcaaaggatcaa |
34954814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 533
Target Start/End: Original strand, 26887989 - 26888105
Alignment:
| Q |
417 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaag |
516 |
Q |
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|||||||||| ||||| |||||||| ||||| |||||| ||| |||||||||||||||| |||||| || |||||||| ||||||| ||||||| |
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| T |
26887989 |
cacttttaccccattttgcacatatccacctcattctcatactaacttaagcatcagagttctaacgcgcttgaaggcacaagtctcctccaccgtgaag |
26888088 |
T |
|
| Q |
517 |
accaccgcaaaggatca |
533 |
Q |
| |
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| T |
26888089 |
agcaccgtgaaggatca |
26888105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 515
Target Start/End: Original strand, 48954343 - 48954440
Alignment:
| Q |
418 |
acttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaa |
515 |
Q |
| |
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||||||||| |||||||||||||| ||||| ||| || ||| |||| ||| | ||||| |||||| | ||||||||||||||||||| | |||||| |
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| T |
48954343 |
acttttaccccatttcgcacatatccacctcattttcatactaacttgagcgtgagagtgctaacgagtttgcaggcacaattctcctccgccgtgaa |
48954440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 531
Target Start/End: Complemental strand, 4156738 - 4156624
Alignment:
| Q |
417 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaag |
516 |
Q |
| |
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|||||||||| ||||| ||||||||||||| ||| || || |||||||| ||||||| |||| | | ||||| ||||||||||||||| ||||||| |
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| T |
4156738 |
cacttttaccatatttcacacatattcacctcattttcatattgacttaagtgtcagagtgttaacatgtttgcagacacaattctcctctgccgtgaag |
4156639 |
T |
|
| Q |
517 |
accaccgcaaaggat |
531 |
Q |
| |
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| |||| | |||||| |
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| T |
4156638 |
atcaccacgaaggat |
4156624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 523
Target Start/End: Complemental strand, 12200436 - 12200383
Alignment:
| Q |
470 |
tcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaagaccaccg |
523 |
Q |
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| T |
12200436 |
tcagagtgctaacgtgcttgcaggcacaattctcctctgtcttggagaccaccg |
12200383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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