View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_20 (Length: 384)
Name: NF17087_low_20
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 2757700 - 2758055
Alignment:
| Q |
18 |
attacaacttacaagtatagagtaatcattcaacaaagaaatagaataatttaggattgataaactttatcacttagagattaaaacttacaagtattgt |
117 |
Q |
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| T |
2757700 |
attacaacttacaagtatagagtaatcattcaacaaagaaatagaataatttaggattgataaactttatcacttacagattacaacttacaagtattgt |
2757799 |
T |
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| Q |
118 |
tagtaaaccaccccactccccccaaaaaagtaaatttgaaccaaaatactttataatgttatcagtccttgaatctattgaccctctcaatcagattatt |
217 |
Q |
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| T |
2757800 |
tagtaaaccaccccactccccccaaaaaagtaaatttaaaccaaaatactttataatgttatcagtccttgaatctattgaccctctcaatcagattatt |
2757899 |
T |
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| Q |
218 |
catagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaaaccaggcaataattcatatacaatatatctcctcata |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2757900 |
catagcaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaaaccaggcaataattcatatacaatatatctcctcata |
2757999 |
T |
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| Q |
318 |
ttttctctatctctcaatgaaatattcccaagcctctccaccacattcacattcat |
373 |
Q |
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| T |
2758000 |
ttttctctatctctcaatgaaatattcccaagcctctccaccacattcacattcat |
2758055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 181 - 373
Target Start/End: Original strand, 2753902 - 2754094
Alignment:
| Q |
181 |
agtccttgaatctattgaccctctcaatcagattattcatagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaa |
280 |
Q |
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| T |
2753902 |
agtccttgaatctgctaaccctcttaatcagattgttcatagtaatagcaaatgcatcctgaaacttatcaaactcagcattgtgatcaccatatactaa |
2754001 |
T |
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| Q |
281 |
accaggcaataattcatatacaatatatctcctcatattttctctatctctcaatgaaatattcccaagcctctccaccacattcacattcat |
373 |
Q |
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| T |
2754002 |
accaggcaataattcatatacaatatatctcctcatattttccctatctctcaatgaaatattcccaagcctctccatgacactcacattcat |
2754094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 2757655 - 2757717
Alignment:
| Q |
50 |
acaaagaaatagaataatttaggattgataaactttatcacttagagattaaaacttacaagtat |
114 |
Q |
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| T |
2757655 |
acaaagaaatagaataaa--agtatagatcaactttatcacttacagattacaacttacaagtat |
2757717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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