View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_22 (Length: 384)
Name: NF17087_low_22
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_22 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 23884166 - 23884524
Alignment:
| Q |
2 |
attgttgaaaaatttacttataataattatctctaaataatatcaaaccaacagcgagaggatattgcattttaacaaaccaacattggtaggttgccaa |
101 |
Q |
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| T |
23884166 |
attgttgaaaaatttacttataataattatctctaaataatatcaaaccaacatcgggaggatattgcattttaacaaatcaacactgataggttgccaa |
23884265 |
T |
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| Q |
102 |
actgcaacacgtgtcgtgtctgttgctgagtcgtggtctgatatgatgtactctcctagcacattgccaaacgctaagagtaaaaaggtgagaatgctcg |
201 |
Q |
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| T |
23884266 |
actgcaacatgtgtcgtgtctgttgctgagtcgtggtctgatatgatgtactctcctagcacattgccaaacgctaagagtaaaaaggttagaatgctcg |
23884365 |
T |
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| Q |
202 |
taagagtaaaaaatgacctaaatcttagttatgagaagttgactggaaaaagaaaggcaaatataccatagaaaatgaaaaaatctttaatatttttggt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23884366 |
taagagtaaaaaatgacctaaatcttagttatgagaagttgactagaaaaagaaaggcaaatataccatggaaaatgaaaaaatctttaatatttttggt |
23884465 |
T |
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| Q |
302 |
aatttactcctaactttactactatatatannnnnnngtaatataagtcacttatattt |
360 |
Q |
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| T |
23884466 |
aatttactcctaactttactactatatatatatttttgtaatataagtcacttatattt |
23884524 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 18595132 - 18595093
Alignment:
| Q |
4 |
tgttgaaaaatttacttataataattatctctaaataata |
43 |
Q |
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| T |
18595132 |
tgttgaaaaatttacttataataattatctctaaataata |
18595093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6568 - 6610
Alignment:
| Q |
1 |
gattgttgaaaaatttacttataataattatctctaaataata |
43 |
Q |
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|||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
6568 |
gattgttgtaaaatttagtcataataattatctctaaataata |
6610 |
T |
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