View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_24 (Length: 381)
Name: NF17087_low_24
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 719047 - 718656
Alignment:
| Q |
1 |
aataataaatcgaccactggaataagaaaatattaactatgttcaactgctcaagactaattcaagtaatttttattaagtaaacttttttggaacttaa |
100 |
Q |
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| T |
719047 |
aataataaatcgaccactggaataagaaaatattaactatgttcaactgctcaagactaattcaagtaatttttaataagtaaacttttttggaacttaa |
718948 |
T |
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| Q |
101 |
tcaaagatatattttatgaaatgactacttattctacctcaaacaaacaaatatatgttatgccgtagga----------gtcgtatgaataaggaaaat |
190 |
Q |
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| T |
718947 |
tcaaagatatattttatgaaatgactacttattctacctcaaacaaacagatatatgttatgccgtaggaaactaaatctgtcgtatgaataaggaaaat |
718848 |
T |
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| Q |
191 |
ttcaaacctacatgatatatttcactttgtggttcttaccaattttatacttcaaacaaatattaagttggtagtgacaatacattgtaatatatagtga |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
718847 |
ttcaaacctacatgatatatttcactttgtggttcttaccaattttatacttcaaacaaatattaagttggtagagacaatacattataatatgtagtga |
718748 |
T |
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| Q |
291 |
tgtagagttcgaaatatggacatctcatttattcgtcttaaaagtgaaatctaactactatactacttgct-aataattacttacttttact |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
718747 |
tgtagagttcgaaatatggacatctcatttattcgtcttaaaagtaaaatctaactactatactacttgataaaaaattacttacttttact |
718656 |
T |
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