View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_27 (Length: 371)
Name: NF17087_low_27
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 31828014 - 31828146
Alignment:
| Q |
117 |
taagagtgtttttgatttgttctgcattgtttcaaaaatggtgtgtgaccatctttgagtaatagaggatcaccaccaccatcaaaactgttatgtctct |
216 |
Q |
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| T |
31828014 |
taagagtgtttttgatttgttctgcattgtttcaaaaatggtgtgtgaccatctttgagtaatagaggatcaccaccaccatcaaaactgttatgtctct |
31828113 |
T |
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| Q |
217 |
atctctttgagtaaacacataaaaatcagaacc |
249 |
Q |
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| T |
31828114 |
atctctttgagtaaacacataaaaatcagaacc |
31828146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 31828180 - 31828244
Alignment:
| Q |
291 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctct |
355 |
Q |
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| T |
31828180 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctct |
31828244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 31827913 - 31827955
Alignment:
| Q |
17 |
cagttaaagtcctctagagagagaccaaaactttcaaattcca |
59 |
Q |
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| T |
31827913 |
cagttaaagtcctctagagagagaccaaaactttcaaattcca |
31827955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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