View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_low_28 (Length: 369)
Name: NF17087_low_28
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 4858059 - 4858410
Alignment:
| Q |
1 |
ttaaggaaacataatcgagtagcaataaaaaatcacaattacctgctgttaggttggnnnnnnn-aatgttttgggcacgaatcctcggtttaagccagt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4858059 |
ttaaggaaacataatcgagtagcaataaaaaatcacaattacctgctgttaggttgattttttttaatgttttgggcacgaatcctcggtttaagccagt |
4858158 |
T |
|
| Q |
100 |
aactccatcctgtgccacaatatctgcatcaaccaaaaaatttatatggtatttacacaagaacactgaagcaaataaacttcaactattccccagtgtg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4858159 |
tactccatcctgtgccacaatatctgcatcaaccaaaaaattaatatggtatttacacaagaacactgaagcaaataaacttcaactattccccagtgtg |
4858258 |
T |
|
| Q |
200 |
tgcacgcacgcagtttttgcagaaataagggaattaattattcttatacatttgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaata |
299 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4858259 |
tgcac----gcagtttttgcagaaataagggaattaattattcttatacatttgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaata |
4858354 |
T |
|
| Q |
300 |
taatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcgatct |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4858355 |
taatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcgatct |
4858410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 5176378 - 5176253
Alignment:
| Q |
65 |
aatgttttgggcacgaatcctcggtttaagccagtaactccatcctgtgccacaatatctgcatcaaccaaaaaatttatatggtatttacacaagaaca |
164 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||| || | |||||||| ||||||||||| |
|
|
| T |
5176378 |
aatgttttgggcatgaatcctcggtttaagccaatagctccatcttgtgccacaatacttgcatcaaccaaaaacttaacatggtattcacacaagaaca |
5176279 |
T |
|
| Q |
165 |
ctgaagcaaataaacttcaactattc |
190 |
Q |
| |
|
|||||||| |||||||| |||||||| |
|
|
| T |
5176278 |
ctgaagcatataaacttaaactattc |
5176253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 5176199 - 5176125
Alignment:
| Q |
209 |
gcagtttttgcagaaataagggaattaattattcttatacatttgttactaattcaaattattcgaatgtaatgt |
283 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||||||||||| |||||||||| |||||| | |||||| |
|
|
| T |
5176199 |
gcagtttttgcacaaataagggtattaattaatcttatacatttgttaataattcaaataattcgactataatgt |
5176125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 4838342 - 4838427
Alignment:
| Q |
252 |
tgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaat |
339 |
Q |
| |
|
||||||| |||||||||||||| | |||||| ||||| |||||||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
4838342 |
tgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgt--gaaatgatgaagctaaaaat |
4838427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 5133262 - 5133385
Alignment:
| Q |
13 |
aatcgagtagcaataaaaaatcacaattacctgctgttaggttggnnnnnnnaatgttttgggcacgaatcctcggtttaagccagtaactccatcctgt |
112 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||| ||| || || | |||||||| |||||||||| |||||| |||||||||| ||| |
|
|
| T |
5133262 |
aatcgagtagaaataaaagatcacaagtacctgctgtttggtaggttttttaaa-gcattgggcacaaatcctcggtacaagccaataactccatcttgt |
5133360 |
T |
|
| Q |
113 |
gccacaatatctgcatcaaccaaaa |
137 |
Q |
| |
|
||||||||| || |||||| ||||| |
|
|
| T |
5133361 |
gccacaataccttcatcaatcaaaa |
5133385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University