View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_low_29 (Length: 365)
Name: NF17087_low_29
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 55245571 - 55245768
Alignment:
| Q |
1 |
tagtaaatgaattaatattgttcgtacttgtgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55245571 |
tagtaaatgaattaatattgttcgtacttgtgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagctctct |
55245670 |
T |
|
| Q |
101 |
tgaggaacctcttcttcaagcttgaattagccagctcctcacaattactagggtatgtttttgaataagagttatccatgtagtgctatagtgtaatt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55245671 |
tgaggaacctcttcttcaagcttgaattagccagctcctcacaattactagggtatgtttttgaataagagttatccatgtagtgctatagtgtaatt |
55245768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 55245833 - 55245922
Alignment:
| Q |
267 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgtgctc |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55245833 |
gtagtaattggggtatgtatgggcaacagtgtcgagtagctagcattgtggtccttggtacgatctgactcatactctgtgtctgggctc |
55245922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 8269967 - 8270071
Alignment:
| Q |
22 |
tcgtacttgtgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagctctcttgaggaacctcttcttcaagc |
121 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||| ||| || || | || ||||||||||||||||||| |
|
|
| T |
8269967 |
tcgtacttttgccaacatagtaatataataatgcacctctttaatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagc |
8270066 |
T |
|
| Q |
122 |
ttgaa |
126 |
Q |
| |
|
||||| |
|
|
| T |
8270067 |
ttgaa |
8270071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University