View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_3 (Length: 667)
Name: NF17087_low_3
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 292 - 667
Target Start/End: Original strand, 2151051 - 2151426
Alignment:
| Q |
292 |
ggggtgaagcatcaatcttccaatgacatttcacagtgatgattctttattccaacaattaacaaaatggtgacaagaaatcaacagcaaggggacacaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151051 |
ggggtgaagcatcaatcttccaatgacatttcacagtgatgattctttattccaacaattaacaaaatggtgacaagaaatcaacagcaaggggacacaa |
2151150 |
T |
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| Q |
392 |
tgaagggcatgtcacttctcatcgaccaagattaactcttgttgggagacaattccttgttactctagtttgtagagcagttgcacatctttaggatttg |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151151 |
tgaagggcatgtcacttctcatcgaccaagattaactcttgttgggagacaattccttgttactctagtttgtagagcagttgcacatctttaggatttg |
2151250 |
T |
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| Q |
492 |
aatgaaatcatgttcattaattgaacttgaactttgtaatggatgtatagaagcttccctcagttccatgaaaaacttagactcttaaaggcatatctta |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2151251 |
aatgaaatcatgttcattaattgaacttgaactttgtaatggatgtatagaagcttccctcagttccatgaaaaacttagactcttaaaggcacatctta |
2151350 |
T |
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| Q |
592 |
ataaatcaaatgtagcaatgtaattttaaaaaacatctgttcaaagttaaaattcatcggcaattaattgccgatg |
667 |
Q |
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| T |
2151351 |
ataaatcaaatgtagcaatgtaattttaaaaaacatctgttcaaagttaaaattcatcgacaattaattgctgatg |
2151426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 4825026 - 4824818
Alignment:
| Q |
84 |
tgtgatagacttttcccttcaggtattctatccgctgatgtcaaaattccttaataattatttctcccttcaggtatttttccactgaagtgaaatcctt |
183 |
Q |
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| T |
4825026 |
tgtgatagacttttcccttcaggtattctatccgctgatgtcaaaattctttaataattatttctcccttcaggtatttttccactgatgtgaaatcctt |
4824927 |
T |
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| Q |
184 |
tggcaaagttcactataatttcaaaaataccaccgcattgcttttgacatcaagaaattggtccactgatgtgaataccctgatgctaaatgtctttttt |
283 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4824926 |
tggcaaagttcactataatttcaaaaatgccaccgcgttgcttttgacatcaagaaattggtccactgatgtgaataccttgatgttaaatgtctttttt |
4824827 |
T |
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| Q |
284 |
ctagtagtg |
292 |
Q |
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| T |
4824826 |
ctagtagtg |
4824818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 95 - 283
Target Start/End: Original strand, 7709640 - 7709828
Alignment:
| Q |
95 |
tttcccttcaggtattctatccgctgatgtcaaaattccttaataattatttctcccttcaggtatttttccactgaagtgaaatcctttggcaaagttc |
194 |
Q |
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|||||| ||| ||||| |||| |||||||||||||||| ||||||||||||| || ||||||||||| || ||||| | |||| || ||| || ||||| |
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| T |
7709640 |
tttcccctcatgtattatatctgctgatgtcaaaattcattaataattattttccctttcaggtatttctcaactgatgagaaaacccttgtcagagttc |
7709739 |
T |
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| Q |
195 |
actataatttcaaaaataccaccgcattgcttttgacatcaagaaattggtccactgatgtgaataccctgatgctaaatgtctttttt |
283 |
Q |
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||| ||||| ||||||| |||||| ||||||||| ||||||| |||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
7709740 |
actttaattgcaaaaatgccaccgtgttgcttttgccatcaagtaattggtccactgatgtgaaatctctgatgttaaatgtctttttt |
7709828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 97 - 292
Target Start/End: Original strand, 17165660 - 17165854
Alignment:
| Q |
97 |
tcccttcaggtattctatccgctgatgtcaaaattccttaataattatttctcccttcaggtatttttccactgaagtgaaatcctttggcaaagttcac |
196 |
Q |
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|||| ||| ||||| |||| ||||||| |||||||| || |||||||||| |||||||||||||| || ||||| | |||| |||||| || ||||||| |
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| T |
17165660 |
tcccctcaagtattatatctgctgatgccaaaattcattgataattattttccccttcaggtatttctcaactgatgggaaaccctttg-cagagttcac |
17165758 |
T |
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| Q |
197 |
tataatttcaaaaataccaccgcattgcttttgacatcaagaaattggtccactgatgtgaataccctgatgctaaatgtcttttttctagtagtg |
292 |
Q |
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| T |
17165759 |
tttaattacaaaaatgccaccacgttgcttttgtcatcaagtaattggtccgctgatgtgaaatctctgatgttaaatgtcttttttctagtagtg |
17165854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 1381550 - 1381503
Alignment:
| Q |
245 |
tccactgatgtgaataccctgatgctaaatgtcttttttctagtagtg |
292 |
Q |
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|||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
1381550 |
tccactgatgtgaaaactctgatgttaaatgtcttttttctagtagtg |
1381503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 51741462 - 51741417
Alignment:
| Q |
247 |
cactgatgtgaataccctgatgctaaatgtcttttttctagtagtg |
292 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
51741462 |
cactgatgtgaaaaccctgatgtcaaatgtcttttttctagtagtg |
51741417 |
T |
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