View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_30 (Length: 357)

Name: NF17087_low_30
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_30
NF17087_low_30
[»] chr1 (2 HSPs)
chr1 (19-347)||(17534940-17535268)
chr1 (48-196)||(26407993-26408141)
[»] chr5 (1 HSPs)
chr5 (48-196)||(27208898-27209046)
[»] chr4 (1 HSPs)
chr4 (48-196)||(26900485-26900633)
[»] chr3 (2 HSPs)
chr3 (48-196)||(23676107-23676255)
chr3 (48-196)||(24048383-24048531)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 17534940 - 17535268
Alignment:
Q  19 gaattaccttacatccttgctttgttgaaactctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatga 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17534940 gaattaccttacatccttgctttgttgcaactctaatgctccctttgccttcaacttcaaaaaattctccatttcctaatttaacttttgagccaaatga 17535039  T
Q  119 gggatcaatgtcaatgaaagcttctttatctcctgtcatatgattgctacacccgctgtccaagtaccacacatttttgtactcttcagttgccttgtga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17535040 gggatcaatgtcaatgaaagcttctttatctcctgtcatatgattgctacacccgctgtccaagtaccacacatttttgtactcttgagttgccttgtga 17535139  T
Q  219 caagcaaagaacaagttgacttcattgttttctgcttctgcaaatgctacatgctgctgattttgaaaccgacactctttctgcacatgtctaaaccttt 318  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  17535140 caagcaaaaaacaagttgacttcattgttttctgcttctacaaaagctacatgctgctgattttgcaaccgacactctttctgcacatgtccaaaccttt 17535239  T
Q  319 tgcaattatgacattgtggcttgcctttg 347  Q
    || ||||||||||||||||||| ||||||    
T  17535240 tgaaattatgacattgtggcttacctttg 17535268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 26408141 - 26407993
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  26408141 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 26408042  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  26408041 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 26407993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 27208898 - 27209046
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  27208898 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 27208997  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  27208998 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 27209046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 26900485 - 26900633
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  26900485 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 26900584  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  26900585 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 26900633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 23676255 - 23676107
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  23676255 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 23676156  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  23676155 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 23676107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 24048531 - 24048383
Alignment:
Q  48 actctaatgctccctttgccttcaacttcaacaaattctccatttcctaatttaacttttgagccaaatgagggatcaatgtcaatgaaagcttctttat 147  Q
    |||| |||||| ||||| ||||  ||||| |||  |||||||||||| |||||||||||||||||| |||| | ||||||||  || || ||| | || |    
T  24048531 actccaatgcttcctttccctttcacttcgacatgttctccatttcccaatttaacttttgagccacatgaagaatcaatgtttataaatgctcccttct 24048432  T
Q  148 ctcctgtcatatgattgctacacccgctgtccaagtaccacacattttt 196  Q
     ||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  24048431 gtccggtcatatggttgctacagccgctgtccaaataccatacattttt 24048383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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