View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_31 (Length: 349)
Name: NF17087_low_31
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 47051223 - 47050897
Alignment:
| Q |
6 |
tggacatcatcatattcaaaattaatttgtgtctattgcactttgccacccaatatctttccaaaaataagtttgtaagatgttatgatttgcattcgat |
105 |
Q |
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| T |
47051223 |
tggacatccttatattcaaaattaatttgtgtctattgcactttgccacccaatatctttccaaatataactttgtaagatgttatgatttgcattcgat |
47051124 |
T |
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| Q |
106 |
ggtacattaatatcattcatgttctgttttaatgttgacaggttttagctccagagttctttgaaaatcaaaaagatattagggatgttgagatattatc |
205 |
Q |
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| T |
47051123 |
ggtacattaatatcattcatgttctgttttaatgttgacagtttttagctccagagttctttgaaaatcaaaaagatattagggatgttgagatattatc |
47051024 |
T |
|
| Q |
206 |
tcatcatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgag |
305 |
Q |
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| T |
47051023 |
tcatgatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgag |
47050924 |
T |
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| Q |
306 |
caaatagtgttgagtccctattggaca |
332 |
Q |
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| T |
47050923 |
caaatagtgttgagtccctattggaca |
47050897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 48107110 - 48106935
Alignment:
| Q |
155 |
tccagagttctttgaaaatcaaaaagatattagggatgttgagatattatctcatcatgatataagggttattgaattgagaggttgtgttggcaattgg |
254 |
Q |
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| T |
48107110 |
tccaaagttgtttgacaatcaaaaagatatcagggatgttgaaacattctctcatgacgaagtaaaagttattgaattaggaggctgtgttggcaattgg |
48107011 |
T |
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| Q |
255 |
tatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgagcaaatagtgttgagtccctattgga |
330 |
Q |
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| T |
48107010 |
tatgaaattgaatttgttatgaatgttctaaaatatgcccacaaacttgagcaaatagttgtgagccccttttgga |
48106935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 48106098 - 48105963
Alignment:
| Q |
174 |
caaaaagatattagggatgttgagatattatctcatcatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgtta |
273 |
Q |
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| T |
48106098 |
caaaaagatattagggatgttgaaatattatctcatgac-aggtaaaagttattgaattgggaggttgtgttgataattggtatgaaattgagtttgtta |
48106000 |
T |
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| Q |
274 |
agaatgttctaaaatgtgcccacaagcttgagcaaat |
310 |
Q |
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| T |
48105999 |
ggaatgttttaaaatatgttcataaacttgagcaaat |
48105963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 311
Target Start/End: Original strand, 48895690 - 48895849
Alignment:
| Q |
155 |
tccagagttctttgaaaatcaaaaagatatta---gggatgttgagatattatctcatcatgatataagggttattgaattgagaggttgtgttggcaat |
251 |
Q |
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||||||||| |||| ||||| |||||||||| |||||||||| | ||| |||||| | || | | | ||||||||||| ||||||||||||||||| |
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| T |
48895690 |
tccagagtttcttgagaatcagaaagatattatgagggatgttgaaacattctctcatgacgaagttaagattattgaattgggaggttgtgttggcaat |
48895789 |
T |
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| Q |
252 |
tggtatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgagcaaata |
311 |
Q |
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|||| ||||||||||||||||| |||||||||||||| | ||||||||| |||||||| |
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| T |
48895790 |
tggtttgaaattgagtttgttatgaatgttctaaaatattgtcacaagcttcagcaaata |
48895849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 47929427 - 47929518
Alignment:
| Q |
222 |
gttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgagcaaatagt |
313 |
Q |
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| T |
47929427 |
gttattgaatttggaggatgtgttggcaattggtttgaaattgagtttgttatgaatgttataaaatatgcacacaaacttgagaaaatagt |
47929518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 48452960 - 48452879
Alignment:
| Q |
222 |
gttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaatgtgcccacaagcttgag |
305 |
Q |
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| T |
48452960 |
gttattgaattgggaggttgtgttggcaattcgtatgaaattgagtttgtcatgaatgt--taaaatatgcccacaaacttgag |
48452879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 313
Target Start/End: Original strand, 39403521 - 39403657
Alignment:
| Q |
177 |
aaagatattagggatgttgagatattatctcatcatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaaga |
276 |
Q |
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||||||| ||||||| |||| ||| |||||| |||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
39403521 |
aaagatagtagggatattgaaggattctctcatgatgagctaaaagttattgaatttgaaggttgtgttggcaattggtttgaaattgagtttgttacga |
39403620 |
T |
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| Q |
277 |
atgttctaaaatgtgcccacaagcttgagcaaatagt |
313 |
Q |
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| T |
39403621 |
atgttctaaaatatgcccataaactcgagcaaatagt |
39403657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 322
Target Start/End: Original strand, 50460277 - 50460410
Alignment:
| Q |
189 |
gatgttgagatattatctcatcatgatataagggttattgaattgagaggttgtgttggcaattggtatgaaattgagtttgttaagaatgttctaaaat |
288 |
Q |
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|||||||| |||| |||||| | || || || |||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||| |||| |
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| T |
50460277 |
gatgttgaaatatgctctcatgacgagatcagagttattgaattgggaggctgtgttggcaattggtatgaaattgagtttgtaatgaatgctctgaaat |
50460376 |
T |
|
| Q |
289 |
gtgcccacaagcttgagcaaatagtgttgagtcc |
322 |
Q |
| |
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| T |
50460377 |
atgcccagaaacatgagcgaatagttttgagtcc |
50460410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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