View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_34 (Length: 340)
Name: NF17087_low_34
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 12868786 - 12869087
Alignment:
| Q |
17 |
gttaggacgtgacgtggcaggagaaggatgtgtgtgttgaccctcgtatgtagtgacgacaatagaagaatcatcggaagaacgctccacacgttttttc |
116 |
Q |
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| T |
12868786 |
gttaggacgtgacgtggcaggagaaggatgtgtgtgttgaccctcgtatgtagtgacgacaatagaagaatcatcggaagaacgctccacgcgctttttc |
12868885 |
T |
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| Q |
117 |
acgccgcaacttgccgttgtacaacgatagtagctcctgtttttgtttcaacacggttacatttacgtgccccgcaagtcaaaaattatattaattaact |
216 |
Q |
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| T |
12868886 |
acgccgcagcttgccgttgtacaacgatagtagctcctgtttttgtttcaacgcggttacatttacgtgccccgcaagtcaaaaactatattaattaact |
12868985 |
T |
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| Q |
217 |
aaatagtgtcccaaattaaattaattagtgaacaactacactgtttattgtaggacactagtgaatgaaatttgagaaatgaaatggaagaaagtttgta |
316 |
Q |
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| T |
12868986 |
aattagtgtcccaaattaaattaattagtgaactactacactgtttattgtaggacacaagagaatgaaatttgagaaatgaaatggaagaaagtttata |
12869085 |
T |
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| Q |
317 |
ta |
318 |
Q |
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|| |
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| T |
12869086 |
ta |
12869087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 12558077 - 12557772
Alignment:
| Q |
17 |
gttaggacgtgacgtggcaggagaaggatgtgtgtgttgaccctcgtatgtagtgacgacaatagaagaatcatcggaagaacgctccacacgttttttc |
116 |
Q |
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|||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||| |
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| T |
12558077 |
gttaggacgtgatgtggtaggagaaggatgtgtttgttgaccctcgtaagtagtgacgacaacagaagaatcatcggaagaacgctccatgcggtttttc |
12557978 |
T |
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| Q |
117 |
acgccgcaacttgccgttgtacaacgatagtagctcctgtttttgtttcaacacggttacatttacgtgccccgcaagtcaaaaattatattaattaact |
216 |
Q |
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| T |
12557977 |
acgccgcaacttgccgttgtacaactatagtagctcctgtttttgtttcaatgcggttacatttacatgtctcgcaagtcaaaaattatattaattaact |
12557878 |
T |
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| Q |
217 |
aaatagtgtcccaaattaaatta---------attagtgaacaactacactgtttattgtaggacactagtgaatgaaatttgagaaatgaaatggaaga |
307 |
Q |
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|| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
12557877 |
aattaatgtcccaaattaaattaattaaattaattagtgaactactacactgtttattgtaggacacaagagaatgaaaattgagaaatgaaatggaaga |
12557778 |
T |
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| Q |
308 |
aagttt |
313 |
Q |
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|||||| |
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| T |
12557777 |
aagttt |
12557772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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