View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_35 (Length: 337)

Name: NF17087_low_35
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_35
NF17087_low_35
[»] chr3 (4 HSPs)
chr3 (17-315)||(10347146-10347443)
chr3 (20-194)||(42436271-42436454)
chr3 (47-141)||(47704428-47704522)
chr3 (23-95)||(7865577-7865649)
[»] chr5 (2 HSPs)
chr5 (20-196)||(8704148-8704333)
chr5 (77-197)||(30304128-30304257)
[»] chr4 (4 HSPs)
chr4 (17-142)||(17284140-17284265)
chr4 (20-131)||(37837076-37837187)
chr4 (20-66)||(9632288-9632334)
chr4 (17-60)||(1479894-1479937)
[»] chr1 (4 HSPs)
chr1 (17-142)||(3601883-3602008)
chr1 (20-196)||(12538347-12538532)
chr1 (20-66)||(2113757-2113803)
chr1 (77-142)||(15234485-15234550)
[»] chr8 (2 HSPs)
chr8 (20-141)||(9809382-9809503)
chr8 (161-197)||(26952255-26952291)
[»] chr7 (4 HSPs)
chr7 (17-141)||(20491805-20491929)
chr7 (47-141)||(12128833-12128927)
chr7 (20-61)||(31957660-31957701)
chr7 (161-197)||(12128768-12128804)
[»] chr2 (1 HSPs)
chr2 (47-197)||(28590645-28590804)
[»] chr6 (1 HSPs)
chr6 (20-128)||(27862737-27862845)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 10347146 - 10347443
Alignment:
Q  17 tgttgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10347146 tgttgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacag 10347245  T
Q  117 ctttaagacactcaataagaatatggtaataattgttattactctgaacacaatcaatcgggcaagagactcctctactatcttcaaactctttggtatt 216  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10347246 ctttaagacactcaataagaatatggtcataattgttattgctctgaacacaatcaagcgggcaagagactcctctactatcttcaaactctttggtatt 10347345  T
Q  217 gttattaatatnnnnnnnnncattgatgccgtgtcaataaattttttaacaacttttggaacaaccttgttgttcnnnnnnnctatcggtaaaaaacaa 315  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  10347346 gttattaatat-aaaaaaagcattgatgccgtgtcaataaattttttaacaacttttggaacaaccttgttgttctttttttctatcggtaaaaaacaa 10347443  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 42436454 - 42436271
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctt 119  Q
    |||||||||||||| || || ||||| ||||||||||||||| |||  | |||||  |||| |||||| |||||| |||  ||||| ||| ||||| |||    
T  42436454 tgcaaaagagtgaatatgagagcatgaatattataatcttgacgaatcaccctgtcaattgtgtcccataaattcgcattccgccatactcgaacaactt 42436355  T
Q  120 taagacactcaataagaatatgg---------taataattgttattactctgaacacaatcaatcgggcaagagactcctctac 194  Q
    || | |||||||| ||||||| |         | ||| |||||||||| ||||||||||||||  || ||||||||||||||||    
T  42436354 tagggcactcaatgagaatatagatgttatcttcatagttgttattacactgaacacaatcaagtggacaagagactcctctac 42436271  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 47704428 - 47704522
Alignment:
Q  47 atattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctttaagacactcaataagaatatg 141  Q
    |||||||| |||||||| |  | |||||  |||| |||||| |||||| |||  ||||| ||||||||||||||| |||||||||||||||||||    
T  47704428 atattatagtcttgatggatcaccctgtcaattgtgtcccataaattcgcattccgccaaacttgaacagctttaggacactcaataagaatatg 47704522  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 7865577 - 7865649
Alignment:
Q  23 aaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattca 95  Q
    |||| ||| |||||||||||||| ||||||||||||||||| | || ||| ||||||| |||||| |||||||    
T  7865577 aaaaaagtaaaaataagtgcatgtatattataatcttgatgcaaaaccctatttattgtgtcccataaattca 7865649  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 8704148 - 8704333
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctt 119  Q
    |||||||||||||| || |||||||| |||||||| |||||| | || | ||||| ||||| |||||| ||||||||||| ||||| ||||| ||| |||    
T  8704148 tgcaaaagagtgaatatgagtgcatgaatattatagtcttgacggagcaccctgtctattgtgtcccataaattcacatcccgccaaacttggacaactt 8704247  T
Q  120 taagacactcaataagaatatgg---------taataattgttattactctgaacacaatcaatcgggcaagagactcctctacta 196  Q
    ||  ||||||||| |||||||||         | ||| ||||||||||  |||||||||||||  ||||||||||| |||||||||    
T  8704248 tagaacactcaatgagaatatggatgatatcttcatagttgttattacattgaacacaatcaagtgggcaagagacccctctacta 8704333  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 30304257 - 30304128
Alignment:
Q  77 attgggtcccaaaaattcacatcgcgccacacttgaacagctttaagacactcaataagaatatgg---------taataattgttattactctgaacac 167  Q
    |||| |||||| |||||| |||  ||||| ||||||||| ||||| ||||||||||||| |||||          | |||||| | |||||  |||||||    
T  30304257 attgtgtcccataaattcgcattccgccaaacttgaacaactttaggacactcaataaggatatgaatattatcttcataattatgattacaatgaacac 30304158  T
Q  168 aatcaatcgggcaagagactcctctactat 197  Q
    ||||||  ||||||||||||||||||||||    
T  30304157 aatcaagtgggcaagagactcctctactat 30304128  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 17284140 - 17284265
Alignment:
Q  17 tgttgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacag 116  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||||   ||| |  |||| |||| | ||||| ||||| | ||||||||||||||    
T  17284140 tgttgcaaaagagtgaaaataagtgcatgtgtattataatcttgacgaagccccctatcgattgtgtccaataaatttacatcacaccacacttgaacag 17284239  T
Q  117 ctttaagacactcaataagaatatgg 142  Q
    ||||| | |||||||| || ||||||    
T  17284240 ctttagggcactcaatgaggatatgg 17284265  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 37837076 - 37837187
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctt 119  Q
    ||||||||||||||||| |||||||  ||||||||||||||| ||| || ||| ||||||  ||| || ||| ||||||| ||||||  |||||||||||    
T  37837076 tgcaaaagagtgaaaatgagtgcatttatattataatcttgacgaaaaaccctatttattttgtcacataaaatcacatcacgccacgtttgaacagctt 37837175  T
Q  120 taagacactcaa 131  Q
    ||||||| ||||    
T  37837176 taagacattcaa 37837187  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 9632288 - 9632334
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaag 66  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  9632288 tgcaaaagagagaaaataagtgcatgtatattataatcttgacgaag 9632334  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 1479894 - 1479937
Alignment:
Q  17 tgttgcaaaagagtgaaaataagtgcatggatattataatcttg 60  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||    
T  1479894 tgttgcaaaagagtgaaaattagtgtatgaatattataatcttg 1479937  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 3601883 - 3602008
Alignment:
Q  17 tgttgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacag 116  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| |||  | ||| || |    |||||| ||||||||||| |||||||||||| |||    
T  3601883 tgttgcaaaagaatgaaaataagtgcatgtatattataatcttgacgaaacaccctattaagattgtcccataaattcacatcacgccacacttgagcag 3601982  T
Q  117 ctttaagacactcaataagaatatgg 142  Q
    ||||| | |||||||| || ||||||    
T  3601983 ctttagggcactcaatgaggatatgg 3602008  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 12538532 - 12538347
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctt 119  Q
    |||||||||||||| || || |||||  |||||||||||||| |||  | |||||  |||| |||||| |||||| |||  ||||| ||||||||| |||    
T  12538532 tgcaaaagagtgaatatgagagcatgactattataatcttgacgaatcaccctgtcaattgtgtcccataaattcgcattccgccatacttgaacaactt 12538433  T
Q  120 taagacactcaataagaatatg---------gtaataattgttattactctgaacacaatcaatcgggcaagagactcctctacta 196  Q
    ||  ||||||||| ||||||||          | ||||||||| ||||  |||||||| ||||| |||||||||||||||||||||    
T  12538432 tagaacactcaatgagaatatgaatgctatcttcataattgtttttacattgaacacattcaattgggcaagagactcctctacta 12538347  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 2113803 - 2113757
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaag 66  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  2113803 tgcaaaagagtgaaaataagtgcatgtatattataatcttgacgaag 2113757  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 15234550 - 15234485
Alignment:
Q  77 attgggtcccaaaaattcacatcgcgccacacttgaacagctttaagacactcaataagaatatgg 142  Q
    |||| |||||| |||||| | || ||||| ||||||||| ||||||||||||||||||||||||||    
T  15234550 attgtgtcccataaattcgcgtcccgccatacttgaacaactttaagacactcaataagaatatgg 15234485  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 9809382 - 9809503
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctt 119  Q
    ||||||| |||||||||||||||||| ||||||||| ||||| |||| |||||    |||  || ||| ||||||||||| || |||||||||||| |||    
T  9809382 tgcaaaatagtgaaaataagtgcatgtatattataaccttgacgaagcatcctaccgattttgttccataaattcacatcacgtcacacttgaacaactt 9809481  T
Q  120 taagacactcaataagaatatg 141  Q
    || | |||||||| || |||||    
T  9809482 tagggcactcaatgaggatatg 9809503  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 26952255 - 26952291
Alignment:
Q  161 tgaacacaatcaatcgggcaagagactcctctactat 197  Q
    |||||||||||||  ||||||||||||||||||||||    
T  26952255 tgaacacaatcaagtgggcaagagactcctctactat 26952291  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 20491929 - 20491805
Alignment:
Q  17 tgttgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacag 116  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| |||| | |||  | |||   ||||| ||||| |||||  | ||||||||||||     
T  20491929 tgttgtaaaagagtgaaaataagtgcatgtatattataatcttgacgaagcaccctaataattttctcccataaatttacatcatgtcacacttgaacaa 20491830  T
Q  117 ctttaagacactcaataagaatatg 141  Q
    ||||| | |||||||| || |||||    
T  20491829 ctttagggcactcaatgaggatatg 20491805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 12128927 - 12128833
Alignment:
Q  47 atattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctttaagacactcaataagaatatg 141  Q
    |||||||| |||||||| |  | |||||  |||| |||||| |||||| |||  ||||| ||||||||||||||| ||||||||||||| |||||    
T  12128927 atattatagtcttgatggatcaccctgtcaattgtgtcccataaattcgcattccgccaaacttgaacagctttaggacactcaataaggatatg 12128833  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 31957660 - 31957701
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttga 61  Q
    ||||||||||||||||| |||||||  |||||||||||||||    
T  31957660 tgcaaaagagtgaaaattagtgcattaatattataatcttga 31957701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 12128804 - 12128768
Alignment:
Q  161 tgaacacaatcaatcgggcaagagactcctctactat 197  Q
    |||||||||||||  ||||||||||||||||||||||    
T  12128804 tgaacacaatcaagtgggcaagagactcctctactat 12128768  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 28590645 - 28590804
Alignment:
Q  47 atattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctttaagacactcaataagaatatg----- 141  Q
    |||||||| |||||||| |  | |||||  |||| |||||| |||||| |||  ||||| ||||||||| ||||| ||||||||||||| |||||         
T  28590645 atattatagtcttgatggatcaccctgtcaattgtgtcccataaattcgcattccgccaaacttgaacaactttaggacactcaataaggatatgaatac 28590744  T
Q  142 ----gtaataattgttattactctgaacacaatcaatcgggcaagagactcctctactat 197  Q
         | |||||| | |||||  |||||||||||||  ||||||||||||||||||||||    
T  28590745 tatcttcataattatgattacaatgaacacaatcaagtgggcaagagactcctctactat 28590804  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 27862737 - 27862845
Alignment:
Q  20 tgcaaaagagtgaaaataagtgcatggatattataatcttgatgaagaatcctgtttattgggtcccaaaaattcacatcgcgccacacttgaacagctt 119  Q
    ||||||| |||||| ||  | ||||| |||||||| |||||  |||| | |||||  |||| |||||| |||||| | || ||||| ||||||||||||     
T  27862737 tgcaaaaaagtgaatatgggagcatgaatattatagtcttgccgaagcaccctgtcaattgtgtcccataaattcgcgtcccgccatacttgaacagcta 27862836  T
Q  120 taagacact 128  Q
    |||||||||    
T  27862837 taagacact 27862845  T

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