View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_36 (Length: 336)
Name: NF17087_low_36
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 132 - 336
Target Start/End: Complemental strand, 31828429 - 31828225
Alignment:
| Q |
132 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
231 |
Q |
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| T |
31828429 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
31828330 |
T |
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| Q |
232 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagcagagaatgagatgaa |
331 |
Q |
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| T |
31828329 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagtagagaatgagatgaa |
31828230 |
T |
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| Q |
332 |
agtac |
336 |
Q |
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||||| |
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| T |
31828229 |
agtac |
31828225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31828545 - 31828476
Alignment:
| Q |
1 |
gaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
70 |
Q |
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| T |
31828545 |
gaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
31828476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 38124275 - 38124325
Alignment:
| Q |
19 |
tcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttca |
69 |
Q |
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| T |
38124275 |
tcttgatattgaaccattttttgaccaatgtttttggccatgaaagcttca |
38124325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 38124421 - 38124465
Alignment:
| Q |
188 |
ttttcttcaagttatcatctctcattgttgatacagcttcatata |
232 |
Q |
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| T |
38124421 |
ttttcttcaagttttcatctctcattgttgagaaaacttcatata |
38124465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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