View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_42 (Length: 310)

Name: NF17087_low_42
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_42
NF17087_low_42
[»] chr6 (2 HSPs)
chr6 (12-206)||(11168599-11168793)
chr6 (12-206)||(11207343-11207537)
[»] chr1 (2 HSPs)
chr1 (12-206)||(13624002-13624196)
chr1 (107-206)||(52037553-52037652)
[»] scaffold0249 (1 HSPs)
scaffold0249 (12-105)||(19489-19582)
[»] chr7 (2 HSPs)
chr7 (12-105)||(21889744-21889837)
chr7 (107-206)||(37477961-37478060)
[»] chr3 (2 HSPs)
chr3 (12-105)||(41050557-41050650)
chr3 (107-206)||(41053588-41053687)
[»] chr5 (3 HSPs)
chr5 (107-206)||(1685212-1685311)
chr5 (107-206)||(39954566-39954665)
chr5 (72-105)||(4805609-4805642)
[»] chr4 (2 HSPs)
chr4 (12-103)||(1974956-1975047)
chr4 (12-85)||(56540522-56540595)
[»] chr2 (2 HSPs)
chr2 (222-295)||(7811792-7811865)
chr2 (107-206)||(44800441-44800540)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 11168599 - 11168793
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtttcttat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11168599 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtttcttat 11168698  T
Q  112 ttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
     || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11168699 ctagtgcggtaacattttgggattggcttaggacacttggattttatcttaagaaatcagtttcatttgacttattcaaacatgtagtaaggatt 11168793  T

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Target: chr6; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 11207343 - 11207537
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtttcttat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11207343 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgttttttat 11207442  T
Q  112 ttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  11207443 ttagtgcggtaacattttgggattggcttagtacacttggagtttatcttaagaaatcagtttcatttaacttattcaaacatatagtaaggatt 11207537  T

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Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 13624002 - 13624196
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtttcttat 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13624002 atgatgatgttaattaacaaatatgagcatttgtattattcagtctatgtatatttgtttagattacataatatttgcactatttggctgtgttccttat 13624101  T
Q  112 ttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  13624102 ttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 13624196  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 52037652 - 52037553
Alignment:
Q  107 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  52037652 cttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 52037553  T

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Target: scaffold0249 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 19489 - 19582
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19489 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatttgcactatttggctgtgtt 19582  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 21889837 - 21889744
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21889837 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatttgcactatttggctgtgtt 21889744  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 37478060 - 37477961
Alignment:
Q  107 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    |||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  37478060 cttatttactgcagtaacattttgggattgacttagtacatttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 37477961  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 41050557 - 41050650
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtgtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41050557 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatttgcactatttggctgtgtt 41050650  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 41053588 - 41053687
Alignment:
Q  107 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | |||| |||||||||||    
T  41053588 cttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcggtttcatttgtcttattcagacatatagtaaggatt 41053687  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 1685311 - 1685212
Alignment:
Q  107 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  1685311 cttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 1685212  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 39954566 - 39954665
Alignment:
Q  107 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    |||||||| ||| |||||||||| |||||| |||||||||||| |||||||| ||   ||||  |||||||||| |||||| ||||||||| ||| ||||    
T  39954566 cttatttagtgctgtaacattttaggattgacttagtacacttagattttatattggtaaattggtttcatttgtcttattcaaacatgtattaatgatt 39954665  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 4805642 - 4805609
Alignment:
Q  72 agattacataatatgtgcactatttggctgtgtt 105  Q
    |||||||||||||| |||||||||||||||||||    
T  4805642 agattacataatatttgcactatttggctgtgtt 4805609  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 1974956 - 1975047
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcactatttggctgtg 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1974956 atgatgatattaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattgcataatatttgcactatttggctgtg 1975047  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 56540522 - 56540595
Alignment:
Q  12 atgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatat 85  Q
    |||||||| ||||||||||||||| |||||||| ||| |||| | | ||||||||||||||||||| |||||||    
T  56540522 atgatgatattaattaacaaatatcaggatttgcattgttcattatgtgtatatttgtttagattaaataatat 56540595  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 7811792 - 7811865
Alignment:
Q  222 tgaacaagttgtaaggattaaaaattggaccaaacatgagctaaagtttgatacttgatgatgacccttggttc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7811792 tgaacaagttgtaaggattaaaaattggaccaaacatgagctaaagtttgatacttgatgatgaccctcggttc 7811865  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 44800441 - 44800540
Alignment:
Q  107 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 206  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||  ||||| |||||||||| |||||| |||||  |||||||||||    
T  44800441 cttatttagtgcggtaacattttggaattgacttagtacacttggattttatcttagtaaatcggtttcatttgtcttattcaaacagatagtaaggatt 44800540  T

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