View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_low_43 (Length: 291)
Name: NF17087_low_43
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 7779289 - 7779026
Alignment:
| Q |
18 |
tatattgtattatgaacttcatttgtaggttaatatgtgtttgcctgtattggtaacctcatttgtaacatgagctagtatgtaaatgagttgacctgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7779289 |
tatattgtattatgaacttcatttgtaggttaatatgtgtttgcctgtattggtaacctcatttgtaacatgagctagtatgtaaatgagttgacctgat |
7779190 |
T |
|
| Q |
118 |
atatcatggaatgtttattggttgactatttgttatgcttattggaaatattgacaactttctttgtgatgtgtgacttgctgctatttatgcaggtgta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7779189 |
atatcatggaatgtttattggttgactatttgttatgcttattggaaatattgacaactttctttgtgatgtgtgacttgctgctatttatgcaggtgta |
7779090 |
T |
|
| Q |
218 |
actggattgaattctatatatggactctcattctattaacttcgcggccctttccatttctctg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7779089 |
actggattgaattctatatatggactctcattctattaacttcgcggccctttccatttctctg |
7779026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 7879107 - 7879300
Alignment:
| Q |
37 |
catttgtaggttaatatgtgtttgcctgtattggtaacctcatttgtaacatgagctagtatgtaaatgagttgacctgatatatcatggaatgtttatt |
136 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||| |||||||||||||| | |
|
|
| T |
7879107 |
catttgtagggtaacatgtgttttactgtattggtaacctcatttgtaacatgagctattatgtaaatgaggtgaaccaatatgtcatggaatgtttact |
7879206 |
T |
|
| Q |
137 |
ggttgact-atttgt--tatgcttattggaaatattgacaactttctttgtgatgtgtgacttgctgctatttatgcaggtgtaactggattgaat |
229 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7879207 |
ggttgactaaattgtcgtatgcttattggaaatattgaca--gttgtttgtgatgtgtgacttgctgctatttatgaaggtgtaactggattgaat |
7879300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 7773112 - 7772956
Alignment:
| Q |
37 |
catttgtaggttaatatgtgtttgcctgtattggtaacctcatttgtaacatgagctagtatgtaaatgagttgacctgatatatcatggaatgtttatt |
136 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||| |
|
|
| T |
7773112 |
catttgtagggcaatatgtgtttgactgtattggtaacctcatttgtaacatgagctattatgtaaatgagctgaatcattacgtcatggaatgtttatt |
7773013 |
T |
|
| Q |
137 |
ggttgactatttgt--tatgcttattggaaatattgacaactttctttgtgatgtgt |
191 |
Q |
| |
|
|||| | ||||||| || ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7773012 |
ggttaattatttgtcataggcttattggaaatattgacaactttgtttgtgatgtgt |
7772956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 7790813 - 7790924
Alignment:
| Q |
77 |
catttgtaacatgagctagtatgtaa-atgagttgacctgatatatcatggaatgtttattggttgactatttgt--tatgcttattggaaatattgaca |
173 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| | | || ||||| | | |||||||||| || |||||| ||||| |||||||||||||||| |
|
|
| T |
7790813 |
catttgtaacatgagctagtatgtaacatgagctgaacccacatttcatgaagtatttattggttaacgatttgtcatatgcatattggaaatattgact |
7790912 |
T |
|
| Q |
174 |
actttctttgtg |
185 |
Q |
| |
|
|||| |||||| |
|
|
| T |
7790913 |
gctttgtttgtg |
7790924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 7905379 - 7905443
Alignment:
| Q |
142 |
actatttgttatgcttattggaaatattgacaactttctttgtgatgtgtgacttgctgctattt |
206 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||| |||||||||||||| | |||| ||||| |
|
|
| T |
7905379 |
actatttggtatgcttattggaaatcttgacagcttcgtttgtgatgtgtgattcgctgttattt |
7905443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 7909038 - 7909103
Alignment:
| Q |
37 |
catttgtaggttaatatgtgtttgcctgtattggtaacctcatttgtaacatgagctagtatgtaa |
102 |
Q |
| |
|
||||| |||| || ||| |||||| ||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
7909038 |
catttttagggtagtatatgtttgactgtattggtaactgcatttgtaacatgatgtagtatgtaa |
7909103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 49040444 - 49040384
Alignment:
| Q |
127 |
aatgtttattggttgactatttgt--tatgcttattggaaatattgacaactttctttgtg |
185 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||||||||| ||||||||||||||| |||||| |
|
|
| T |
49040444 |
aatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtg |
49040384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 24381871 - 24381927
Alignment:
| Q |
121 |
tcatggaatgtttattggttgactatttgt--tatgcttattggaaatattgacaac |
175 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
24381871 |
tcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattgacaac |
24381927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University