View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_44 (Length: 290)
Name: NF17087_low_44
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 49629814 - 49629556
Alignment:
| Q |
18 |
tgattgatctacgtgtgtgtttggggaatgtatgctagcacatatgactctgaattagctggattttttaaaatagattttgttaaaactgtatatgaag |
117 |
Q |
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| T |
49629814 |
tgattgatctacgtgtgtgtttggggaatgtatgctagcacatatgactctgaattagctggattttttaaaatagattttgttaaaactgtatatgaag |
49629715 |
T |
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| Q |
118 |
tgaagtagttaatatttgtttttattctctttcaaatatagggtaatcctatttgaggtggaattcgaaatattgacaaatggttgttggaatctaaccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
49629714 |
tgaagtagttaatatttgtttttattctctttcaaatagagggtaatcctatttgaggtggaattcgaa-tattggtacgaggttgttggaatctaaccc |
49629616 |
T |
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| Q |
218 |
ttccgctagactcaatctcgttgtttgccccttctgttagaccgaacctaattgttggat |
277 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49629615 |
ttctgctagactcaatctcgttgtttgccccttctgttagaccgaacctaattgttggat |
49629556 |
T |
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