View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_45 (Length: 287)
Name: NF17087_low_45
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_45 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 11168346 - 11168608
Alignment:
| Q |
19 |
cttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatc |
117 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11168346 |
cttagcaagttcaaatatgttttgataaaaagtaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatc |
11168445 |
T |
|
| Q |
118 |
actgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11168446 |
actgagtttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
11168545 |
T |
|
| Q |
218 |
gtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11168546 |
gtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
11168608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 126 - 280
Target Start/End: Original strand, 11207198 - 11207352
Alignment:
| Q |
126 |
tgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcctgtgactgt |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11207198 |
tgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcctgtgactgt |
11207297 |
T |
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| Q |
226 |
taattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11207298 |
taattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
11207352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 8743728 - 8743687
Alignment:
| Q |
189 |
aaagcaatttatgaattatattggagcctgtgactgttaatt |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
8743728 |
aaagcaatttatgaattatattggagcctgtgactgttaatt |
8743687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 13623749 - 13624011
Alignment:
| Q |
19 |
cttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatc |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
13623749 |
cttagcaagttcaaatatgttttgataaaaaggaagcaatcagatattttgaaaatgtgataacaatcgtggatttagaagagtataaatcaatgcgatc |
13623848 |
T |
|
| Q |
118 |
actgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13623849 |
gctgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
13623948 |
T |
|
| Q |
218 |
gtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
280 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
13623949 |
gtgactgttaattttcatgtagtgtagaggaggtcaagttattgagtatgatcatgatgatgt |
13624011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 19236 - 19498
Alignment:
| Q |
19 |
cttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19236 |
cttagcaagttcaaatatgttttgataaaaagaaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagagtataaatcaatgcgatt |
19335 |
T |
|
| Q |
118 |
actgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19336 |
gctgagcttgaataaggatttgtcactgtcaatccttcataaattttgttttttgatacactaaaaaaccaaaagcaatttatgaattatatcggagcct |
19435 |
T |
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| Q |
218 |
gtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
280 |
Q |
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||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
19436 |
gtgactgttaattctggtgtagtgtagtggagctcaagttattgagtatgatcatgatgatgt |
19498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 41050318 - 41050566
Alignment:
| Q |
19 |
cttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41050318 |
cttagcaagttcaaatatgttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagagtataaatcaatgcgatc |
41050417 |
T |
|
| Q |
118 |
actgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
217 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41050418 |
gctgagctc--------------cactgtcaatccttcataaatgttgttttgtgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
41050503 |
T |
|
| Q |
218 |
gtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
280 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
41050504 |
gtgactgttaattctggtgtagtgtagtggagctcaagttattgagtatgatcatgatgatgt |
41050566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 21890076 - 21889828
Alignment:
| Q |
19 |
cttagcaagttcaaatat-ttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagaatataaatcaatgcgatc |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
21890076 |
cttagcaagttcaaatatgttttgataaaaaggaagcaatcagatattttgaaaatgtgatcacaatcgtggatttagaagagtataaatcaatgtgatc |
21889977 |
T |
|
| Q |
118 |
actgagcttgaataaggatttgtcactgtcaatccttcataaatgttgttttttgatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21889976 |
gctgagctc--------------cactgtcaatccttcataaatgttgttttgagatacactaaaaaaccaaaagcaatttatgaattatattggagcct |
21889891 |
T |
|
| Q |
218 |
gtgactgttaattttcgtgtagtgtagaggagctcaagttatttagtatgatcatgatgatgt |
280 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
21889890 |
gtgactgttaattctggtgtagtgtagtggagctcaagttattgagtatgatcatgatgatgt |
21889828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 39585228 - 39585272
Alignment:
| Q |
55 |
aatcagatattttgaaaatgtgatcacaatcgtggatttagaaga |
99 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||| |||| |
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|
| T |
39585228 |
aatcaaatattttgaaaatgtgatcaaaatcatggatttaaaaga |
39585272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 1974854 - 1974904
Alignment:
| Q |
180 |
aaaaaaccaaaagcaatttatgaattatattggagcctgtgactgttaatt |
230 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1974854 |
aaaaaatccaaagcaatttatgaattatattggagcctgtgactgttaatt |
1974904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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