View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_48 (Length: 279)
Name: NF17087_low_48
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 718617 - 718356
Alignment:
| Q |
1 |
tgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgcttgtgcaactaaattaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
718617 |
tgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgctagtgcaactaaattaact |
718518 |
T |
|
| Q |
101 |
atggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcacccttacataaacatatacaagcaaattacacgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
718517 |
atggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcatccttacataaacatatacaagcaaattacacgaata |
718418 |
T |
|
| Q |
201 |
aaatttctnnnnnnnnncatgaagactacttacttgtttgtgacagccttcttggccttagc |
262 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
718417 |
aaatttctaaaaaaaaacatgaagactacttacttgtttgtgacagccttcttggccttagc |
718356 |
T |
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