View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_5 (Length: 620)

Name: NF17087_low_5
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_5
NF17087_low_5
[»] scaffold0043 (2 HSPs)
scaffold0043 (272-541)||(13686-13956)
scaffold0043 (271-514)||(11370-11614)
[»] chr6 (30 HSPs)
chr6 (272-541)||(12746903-12747173)
chr6 (271-541)||(28894234-28894505)
chr6 (364-541)||(35026981-35027157)
chr6 (318-540)||(15578718-15578938)
chr6 (272-541)||(33678941-33679213)
chr6 (268-456)||(11410940-11411131)
chr6 (148-250)||(20189837-20189935)
chr6 (148-250)||(22146056-22146154)
chr6 (271-328)||(14790808-14790865)
chr6 (135-250)||(16730976-16731087)
chr6 (272-326)||(14795838-14795892)
chr6 (426-483)||(34502493-34502550)
chr6 (318-387)||(9313589-9313659)
chr6 (318-387)||(28118078-28118148)
chr6 (438-484)||(5618140-5618186)
chr6 (318-387)||(12980540-12980610)
chr6 (337-387)||(16883804-16883854)
chr6 (333-398)||(2773224-2773289)
chr6 (271-319)||(2331588-2331636)
chr6 (337-413)||(12983447-12983523)
chr6 (271-319)||(22221920-22221968)
chr6 (271-319)||(22247755-22247803)
chr6 (545-602)||(16731134-16731191)
chr6 (318-401)||(20527208-20527292)
chr6 (271-319)||(22920835-22920883)
chr6 (328-387)||(11183894-11183953)
chr6 (269-319)||(17232161-17232211)
chr6 (550-602)||(20189731-20189783)
chr6 (550-602)||(22146208-22146260)
chr6 (280-348)||(17696868-17696936)
[»] chr8 (23 HSPs)
chr8 (272-541)||(5828121-5828391)
chr8 (271-541)||(39659711-39659982)
chr8 (272-541)||(9467165-9467429)
chr8 (272-456)||(453764-453951)
chr8 (364-537)||(13332186-13332359)
chr8 (420-484)||(31986425-31986489)
chr8 (420-480)||(30645627-30645687)
chr8 (420-484)||(31981498-31981562)
chr8 (318-387)||(41778790-41778859)
chr8 (315-401)||(12820690-12820777)
chr8 (319-387)||(13097154-13097223)
chr8 (271-339)||(24903249-24903317)
chr8 (272-318)||(22654570-22654616)
chr8 (269-315)||(23619128-23619174)
chr8 (337-387)||(44008417-44008467)
chr8 (441-486)||(14627494-14627539)
chr8 (278-315)||(17012803-17012840)
chr8 (278-315)||(17544361-17544398)
chr8 (282-315)||(17931296-17931329)
chr8 (271-311)||(12575299-12575339)
chr8 (533-581)||(13331838-13331886)
chr8 (271-319)||(24435338-24435385)
chr8 (271-319)||(24445384-24445431)
[»] chr7 (31 HSPs)
chr7 (271-541)||(16547097-16547368)
chr7 (271-541)||(16618294-16618565)
chr7 (271-541)||(3540923-3541192)
chr7 (280-492)||(17152099-17152310)
chr7 (271-541)||(6964381-6964652)
chr7 (271-541)||(38431487-38431758)
chr7 (135-274)||(26809114-26809253)
chr7 (434-541)||(44017709-44017816)
chr7 (420-541)||(26153245-26153366)
chr7 (271-328)||(6967337-6967394)
chr7 (271-328)||(17866352-17866409)
chr7 (272-328)||(17857880-17857936)
chr7 (421-484)||(8258037-8258099)
chr7 (318-387)||(22083246-22083316)
chr7 (545-602)||(26809030-26809087)
chr7 (328-387)||(23313318-23313377)
chr7 (15-65)||(8397321-8397371)
chr7 (427-482)||(43549278-43549333)
chr7 (266-319)||(709777-709830)
chr7 (270-319)||(2252177-2252226)
chr7 (545-602)||(6214555-6214612)
chr7 (271-319)||(26460771-26460819)
chr7 (272-319)||(23598528-23598575)
chr7 (271-348)||(20100921-20100998)
chr7 (337-387)||(23108116-23108167)
chr7 (272-315)||(44017548-44017591)
chr7 (343-407)||(6214132-6214194)
chr7 (533-602)||(6964036-6964105)
chr7 (271-319)||(2349766-2349814)
chr7 (201-252)||(11825757-11825806)
chr7 (271-315)||(37165916-37165960)
[»] scaffold0083 (2 HSPs)
scaffold0083 (272-541)||(42695-42965)
scaffold0083 (502-541)||(53213-53252)
[»] chr5 (21 HSPs)
chr5 (271-537)||(9690860-9691126)
chr5 (28-252)||(28562761-28562982)
chr5 (28-252)||(28566329-28566550)
chr5 (271-541)||(33320678-33320948)
chr5 (357-543)||(26338075-26338261)
chr5 (272-541)||(2499762-2500032)
chr5 (271-541)||(33921195-33921460)
chr5 (272-487)||(21680506-21680721)
chr5 (318-520)||(35432285-35432496)
chr5 (420-484)||(19686319-19686383)
chr5 (420-484)||(19689702-19689766)
chr5 (272-401)||(1810190-1810321)
chr5 (422-483)||(2453433-2453494)
chr5 (271-358)||(34406006-34406095)
chr5 (545-602)||(35432776-35432833)
chr5 (337-387)||(17944866-17944916)
chr5 (444-536)||(36330820-36330911)
chr5 (272-319)||(26727252-26727299)
chr5 (269-319)||(25185695-25185744)
chr5 (159-216)||(42062568-42062624)
chr5 (282-315)||(20056160-20056193)
[»] scaffold0401 (1 HSPs)
scaffold0401 (268-541)||(4353-4627)
[»] chr3 (31 HSPs)
chr3 (29-252)||(2783618-2783838)
chr3 (272-541)||(27054966-27055236)
chr3 (434-541)||(28327538-28327645)
chr3 (434-541)||(28330863-28330970)
chr3 (434-541)||(3305944-3306050)
chr3 (420-541)||(4250480-4250601)
chr3 (318-482)||(9154959-9155123)
chr3 (337-482)||(9158140-9158285)
chr3 (318-484)||(18551819-18551984)
chr3 (420-483)||(54736116-54736179)
chr3 (271-398)||(19869215-19869344)
chr3 (421-484)||(18883363-18883426)
chr3 (272-401)||(25492132-25492263)
chr3 (272-414)||(36036711-36036855)
chr3 (420-484)||(42354316-42354380)
chr3 (269-319)||(16314350-16314400)
chr3 (269-319)||(16414516-16414566)
chr3 (269-319)||(18495344-18495394)
chr3 (159-217)||(35412247-35412304)
chr3 (550-600)||(36037264-36037314)
chr3 (318-387)||(50096909-50096978)
chr3 (159-216)||(18645111-18645167)
chr3 (271-319)||(5886746-5886794)
chr3 (271-319)||(5896730-5896778)
chr3 (441-536)||(26822186-26822280)
chr3 (271-328)||(3306156-3306214)
chr3 (278-320)||(4225623-4225664)
chr3 (282-319)||(6173123-6173160)
chr3 (271-315)||(20536332-20536376)
chr3 (271-315)||(28327763-28327807)
chr3 (271-315)||(34983540-34983584)
[»] chr2 (22 HSPs)
chr2 (29-252)||(11059292-11059513)
chr2 (30-252)||(13517803-13518021)
chr2 (272-541)||(38315801-38316071)
chr2 (434-541)||(40677689-40677796)
chr2 (272-456)||(29435926-29436113)
chr2 (420-484)||(1506542-1506606)
chr2 (272-413)||(13572041-13572186)
chr2 (337-387)||(30720020-30720070)
chr2 (420-481)||(1503338-1503399)
chr2 (420-484)||(4577974-4578043)
chr2 (449-519)||(40139235-40139304)
chr2 (272-319)||(18939200-18939247)
chr2 (272-319)||(22592819-22592866)
chr2 (221-251)||(24385570-24385600)
chr2 (221-251)||(32074744-32074774)
chr2 (271-315)||(10601146-10601191)
chr2 (270-315)||(37279443-37279488)
chr2 (533-602)||(38316347-38316416)
chr2 (271-315)||(1386190-1386234)
chr2 (271-315)||(16790523-16790567)
chr2 (271-311)||(24384924-24384963)
chr2 (271-315)||(40677527-40677571)
[»] scaffold0045 (1 HSPs)
scaffold0045 (271-507)||(90297-90534)
[»] chr4 (34 HSPs)
chr4 (270-473)||(37176799-37177001)
chr4 (272-536)||(13979232-13979497)
chr4 (72-255)||(2541299-2541481)
chr4 (272-541)||(15851267-15851537)
chr4 (271-482)||(33400074-33400286)
chr4 (422-541)||(19928974-19929094)
chr4 (441-537)||(26703415-26703511)
chr4 (10-120)||(37176586-37176697)
chr4 (422-484)||(10386083-10386145)
chr4 (271-328)||(647202-647259)
chr4 (271-328)||(650474-650531)
chr4 (420-480)||(10247968-10248028)
chr4 (420-482)||(11702492-11702554)
chr4 (318-387)||(24605051-24605121)
chr4 (135-215)||(7395279-7395359)
chr4 (440-482)||(33400288-33400330)
chr4 (318-413)||(7394674-7394769)
chr4 (272-319)||(3719261-3719308)
chr4 (272-319)||(19929195-19929242)
chr4 (441-536)||(21217496-21217590)
chr4 (506-541)||(37176762-37176797)
chr4 (266-315)||(8871464-8871513)
chr4 (271-319)||(14702212-14702260)
chr4 (160-212)||(22093481-22093533)
chr4 (550-602)||(24605514-24605566)
chr4 (271-319)||(49639581-49639629)
chr4 (272-319)||(3734619-3734666)
chr4 (548-599)||(7395156-7395207)
chr4 (283-319)||(11561123-11561159)
chr4 (271-315)||(24150985-24151029)
chr4 (272-315)||(29325134-29325178)
chr4 (271-315)||(38283246-38283290)
chr4 (272-315)||(40616573-40616617)
chr4 (272-348)||(49636289-49636365)
[»] scaffold0273 (1 HSPs)
scaffold0273 (272-541)||(19509-19780)
[»] chr1 (31 HSPs)
chr1 (270-541)||(18392486-18392760)
chr1 (271-541)||(34552437-34552708)
chr1 (394-536)||(33898424-33898565)
chr1 (434-541)||(23441201-23441308)
chr1 (271-541)||(6205975-6206246)
chr1 (422-541)||(50196864-50196983)
chr1 (271-456)||(49716548-49716736)
chr1 (286-456)||(49720030-49720203)
chr1 (271-328)||(13493452-13493509)
chr1 (272-328)||(10765109-10765165)
chr1 (318-387)||(34066473-34066543)
chr1 (318-413)||(49148000-49148096)
chr1 (328-387)||(8435364-8435423)
chr1 (328-386)||(22448007-22448065)
chr1 (328-386)||(22453241-22453299)
chr1 (318-387)||(22456540-22456610)
chr1 (441-478)||(3087667-3087704)
chr1 (271-348)||(17902552-17902629)
chr1 (272-337)||(20981647-20981712)
chr1 (497-541)||(3087705-3087749)
chr1 (271-319)||(16848628-16848676)
chr1 (271-319)||(24200008-24200056)
chr1 (272-328)||(50196715-50196771)
chr1 (271-318)||(14546480-14546527)
chr1 (272-319)||(16838699-16838746)
chr1 (272-319)||(37642167-37642214)
chr1 (270-315)||(23441038-23441083)
chr1 (533-602)||(34552984-34553053)
chr1 (327-387)||(17618919-17618979)
chr1 (339-387)||(23990203-23990251)
chr1 (271-319)||(28918682-28918730)
[»] scaffold0007 (2 HSPs)
scaffold0007 (393-536)||(92531-92673)
scaffold0007 (271-315)||(92751-92795)
[»] scaffold0068 (1 HSPs)
scaffold0068 (272-487)||(33730-33945)
[»] scaffold0014 (2 HSPs)
scaffold0014 (420-484)||(223857-223921)
scaffold0014 (420-484)||(228783-228847)
[»] scaffold0214 (3 HSPs)
scaffold0214 (420-503)||(20187-20269)
scaffold0214 (420-484)||(13755-13819)
scaffold0214 (420-484)||(27771-27835)
[»] scaffold0134 (1 HSPs)
scaffold0134 (318-387)||(7482-7552)
[»] scaffold0002 (1 HSPs)
scaffold0002 (376-532)||(468329-468483)
[»] scaffold0264 (1 HSPs)
scaffold0264 (280-319)||(24193-24232)
[»] scaffold0067 (1 HSPs)
scaffold0067 (272-319)||(27668-27715)
[»] scaffold0175 (1 HSPs)
scaffold0175 (278-319)||(28430-28471)
[»] scaffold0012 (1 HSPs)
scaffold0012 (278-319)||(26649-26690)
[»] scaffold0084 (2 HSPs)
scaffold0084 (268-315)||(29673-29719)
scaffold0084 (271-315)||(19594-19637)
[»] scaffold1048 (1 HSPs)
scaffold1048 (282-339)||(1687-1744)


Alignment Details
Target: scaffold0043 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 13956 - 13686
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaat 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||    
T  13956 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacagggactgtttcaatttctactcggcaaaagcgttaaaat 13857  T
Q  371 aaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaa 470  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13856 aaaggatgtattaaattgatgggttgccctaggcagttggatttggttaaaataaaaagtaaataacagaaaataaaatggtttgataattggattaaaa 13757  T
Q  471 cagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13756 cagatgatcaagccttccgaatcctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 13686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 271 - 514
Target Start/End: Complemental strand, 11614 - 11370
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||| ||||||    
T  11614 ttgataaatatttggcaagtgtaccaaaagctatcgaagcagtaataaagttcgtatccacagggactgtttcaatttatactcggcaaaagcgttaaaa 11515  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  11514 taaaggatgtattaaatttatgggtttccctaggcagttggatttggttgcaataaatagtaaataacagaaaataaaatggtttgataattggattaaa 11415  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagta 514  Q
    ||| |||||||||||||  |||| |||||||||||||| ||||||    
T  11414 acatatgatcaagccttctgaatcctctattgctcactgtgagta 11370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 12747173 - 12746903
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaat 370  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  12747173 tgatagatatttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggactgtttcaatttctactcggcaaaagcgttaaaat 12747074  T
Q  371 aaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaa 470  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  12747073 aaaggatgtattaaatttatgggttgccctaggcagttggatttggttgcaataaaaagtgaataacagaaaataaaatggtttgataattggattaaaa 12746974  T
Q  471 cagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||    
T  12746973 cagatgatcaagcctttcaaatcctctattgctcattgtgagtaatttgcctctcttctctctcaaagaaa 12746903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 271 - 541
Target Start/End: Original strand, 28894234 - 28894505
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | ||||||    
T  28894234 ttgatagatatttgacaagtgtaacaaaagctatcgaagtagtaataaagttcgtatccacatggactgtttcaatttctactcggcaaaaacgttaaaa 28894333  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28894334 taaaggatgtattaaatttatgggttgccctaggcagttagatttggttgcaataaaaagtaaataacagaaaataaaatggtttgataattggattaaa 28894433  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28894434 acagatgatcaagcattttgaattctctattgctcactgtgagtaatttgcctctcttctctctcaaagaaa 28894505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 364 - 541
Target Start/End: Original strand, 35026981 - 35027157
Alignment:
Q  364 ttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattgg 463  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  35026981 ttaaaataaaggatgtattaaatttatgggttgccctaggcagttggatttggttgcaataaaaagtaa-taacggaaaataaaatggtttgataattgg 35027079  T
Q  464 attaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35027080 attaaaacagatgatcaagcctttcgaatcctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 35027157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 318 - 540
Target Start/End: Original strand, 15578718 - 15578938
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatttgg 416  Q
    ||||||||||| ||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  15578718 aagttcgtatctacagggactatttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttatgggttgccctaggcagttggattcgg 15578817  T
Q  417 ttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaat 516  Q
    || || |||||  |||  || || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  15578818 ttgca-taaaacttaaacaa-agtaaataaaa-ggtttgataattggattaaaacagatgatcaagcctttcgaatcctctattgcttactgtgagtaat 15578914  T
Q  517 ttgcctctcttctctctcaaagaa 540  Q
    ||| ||||||||||||||||||||    
T  15578915 ttggctctcttctctctcaaagaa 15578938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 272 - 541
Target Start/End: Original strand, 33678941 - 33679213
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaag--ctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaa 367  Q
    ||||||||||||||||||||||||||||   |||||||||||||| |||||||| |||| || ||||  ||| | ||||||||||   |||     ||||    
T  33678941 tgataaatatttggcaagtgtaccaaaaaaactatcgaagtagtactaaagttcatatccacgaggaccgttgttaatttctacttaacaagttagttaa 33679040  T
Q  368 aataaaggatgtattaaatttatgggttgccctaa-acagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatt 466  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||  | |||||  |||  || || ||||||||||| ||||||||||||||    
T  33679041 aataaaggatgtatgaaatttatgggttgccctaggacagttggatttggtttta-taaaacttaaacaa-agtaaataaaatgggttgataattggatt 33679138  T
Q  467 aaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  33679139 aaaacagatgatcaagcctttcgaattctttattgctcactgtgagtaatttggctctcttctctctcaaagaaa 33679213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 268 - 456
Target Start/End: Complemental strand, 11411131 - 11410940
Alignment:
Q  268 ttgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaagga---ttgtttcaatttctactcggcaaaagct 363  Q
    ||||||||| ||| ||| |||||||||||||| ||||||||||| |||||||||||||||| || || |   |||||  ||||||||||  ||||   |     
T  11411131 ttgttgatagataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgagtaccattgtt--aatttctacttagcaagttcg 11411034  T
Q  364 ttaaaataaaggatgtattaaattt-atgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttga 456  Q
    ||||||||||||||||| ||||||| |||||||||||||  ||||| ||||||||| ||||||||||||| ||| |||||| ||||||||||||    
T  11411033 ttaaaataaaggatgtagtaaattttatgggttgccctaggcagttcgatttggttgcaataaaaagtaaataaaagaaaagaaaatggtttga 11410940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 20189935 - 20189837
Alignment:
Q  148 acaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaagccatgagatgaatctatt 247  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||   ||||||||||||  |||||||||||||    
T  20189935 acaacatggtttcatggttaattttattttccatgctatttatgtgtatctctatgtctagctaatttcc--tttgattaagcca--agatgaatctatt 20189840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 22146056 - 22146154
Alignment:
Q  148 acaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaagccatgagatgaatctatt 247  Q
    ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||   ||||||||||||  |||||||||||||    
T  22146056 acaacatggtttcatggttaattttattttccatgctatttatgtgtatctctatgtctagctaatttcc--tttgattaagcca--agatgaatctatt 22146151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 14790865 - 14790808
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14790865 ttgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 14790808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 16730976 - 16731087
Alignment:
Q  135 agagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaagccatg 234  Q
    |||||| ||||  |||||||| ||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||   ||||||||||||      
T  16730976 agagaattgaggaacaacatgttttcatggttaattttagttttcatgctatttatttgtatctctatgtctagctaatttcc--tttgattaagcca-- 16731071  T
Q  235 agatgaatctattgta 250  Q
    || |||||||||||||    
T  16731072 aggtgaatctattgta 16731087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 14795892 - 14795838
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgta 326  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14795892 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgta 14795838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 34502550 - 34502493
Alignment:
Q  426 aaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagc 483  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34502550 aaagtaaataacagaaaataaaatggtttgataattggattaaaacatatgatcaagc 34502493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 9313589 - 9313659
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  9313589 aagttcgtatccacaaggactgtttcaatttctactcagcaaaagcgttaaaataaaggatatattaaatt 9313659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 28118148 - 28118078
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  28118148 aagttcgtatccacagggactgtttcaatttctactcggcaaaagcgttaaaataaaggatatattaaatt 28118078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 5618140 - 5618186
Alignment:
Q  438 agaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5618140 agaaaataaaatagtttgataattggattaaaacagatgatcaagcc 5618186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 12980540 - 12980610
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12980540 aagttcgtatccacatggactgtttcaatttctactcagcaaaaacgttaaaataaaggatgtattaaatt 12980610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 16883854 - 16883804
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16883854 tgtttcaatttctactcggtaaaagcgttaaaataaaggatgtattaaatt 16883804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 2773224 - 2773289
Alignment:
Q  333 ggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgcc 398  Q
    |||||||||||||||||||||||||||    |||||||||||||||| |||| |||||||||||||    
T  2773224 ggattgtttcaatttctactcggcaaagatgttaaaataaaggatgtgttaagtttatgggttgcc 2773289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 2331636 - 2331588
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  2331636 ttgatagatatttggcaagtgtaccaaaaactatcgaagtagtaataaa 2331588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 12983447 - 12983523
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatt 413  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||||||| |   |||||||||  ||||||||||    
T  12983447 tgtttcaatttctactcagcaaaaacgttaaaataaaggatgtattaaattcaaatgttgccctaggcagttggatt 12983523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 22221968 - 22221920
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  22221968 ttgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaa 22221920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 22247803 - 22247755
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  22247803 ttgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaa 22247755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 16731134 - 16731191
Alignment:
Q  545 tagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||||||||||||||| ||||||||||| ||| |||| |||||||||| |||||||||    
T  16731134 tagtctttattcataactattcttgcttgatgcttttcttaatatcgtgtgtatgact 16731191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 20527208 - 20527292
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgcccta 401  Q
    ||||||||||| ||| ||| |||||| |||||||||||  |||||| |||||||||| ||||||||||||| |  ||||||||||    
T  20527208 aagttcgtatccacagggactgtttcgatttctactcgataaaagcgttaaaataaatgatgtattaaattcaaaggttgcccta 20527292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 22920883 - 22920835
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||    
T  22920883 ttgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 22920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 11183894 - 11183953
Alignment:
Q  328 cacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||| ||| |||||||||||||||| || |||| | ||||||||||||||||||||||||    
T  11183894 cacagggactgtttcaatttctacttggaaaaaacgttaaaataaaggatgtattaaatt 11183953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 17232211 - 17232161
Alignment:
Q  269 tgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||| ||||||| |||||||||||| | |||||||||||||||||||    
T  17232211 tgttgatagatatttgacaagtgtaccaataactatcgaagtagtaataaa 17232161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 602
Target Start/End: Complemental strand, 20189783 - 20189731
Alignment:
Q  550 tttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    ||||||||||| ||||||| ||||||| |||| |||||||||| |||||||||    
T  20189783 tttattcataagtattcttacttaatgcttttcttaatatcgtgtgtatgact 20189731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 602
Target Start/End: Original strand, 22146208 - 22146260
Alignment:
Q  550 tttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    ||||||||||| ||||||| ||||||| |||| |||||||||| |||||||||    
T  22146208 tttattcataagtattcttacttaatgcttttcttaatatcgtgtgtatgact 22146260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 17696936 - 17696868
Alignment:
Q  280 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgtttcaatttc 348  Q
    |||||||||||||||||  | |||||||||||||||||||  ||||  |||||||| ||| | ||||||    
T  17696936 atttggcaagtgtaccaccaactatcgaagtagtaataaatatcgttccacaaggactgtgttaatttc 17696868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 5828391 - 5828121
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaat 370  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| ||||||| |||||||    
T  5828391 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtagtaaagttcgtatccacatggactgtttcaatttctactcgtcaaaagcgttaaaat 5828292  T
Q  371 aaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaa 470  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5828291 aaaggatgcattaaatttatgggttgccctaggcagttggatttggttgcaataaaaagtaaataacagaaaataaaatggtttgataattggattaaaa 5828192  T
Q  471 cagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    || || |||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||    
T  5828191 catatcatcaagcctttcgaatcctctattgctcagtgtgagtaatttgcctctcttctctctcaaagaaa 5828121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 271 - 541
Target Start/End: Original strand, 39659711 - 39659982
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaagga---ttgtttcaatttctactcggcaaaagcttta 366  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||   |||||  ||||||||||  ||||   | |||    
T  39659711 ttgatagatatttggcaagtgtaccgaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccattgtt--aatttctacttagcaagttcgtta 39659807  T
Q  367 aaataaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattgga 464  Q
    |||||||||||||| ||||||| ||||| ||||||||  |||||||||||||||  | ||||| ||||  || || ||||||||||||||||||||||||    
T  39659808 aaataaaggatgtagtaaattttatggggttgccctaggcagttggatttggtttta-taaaacgtaaacaa-agtaaataaaatggtttgataattgga 39659905  T
Q  465 ttaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||| |||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||    
T  39659906 ttaaaacagatgatctagcctttcgaatcctctattgctcaccgtgagtaatttggctctcttctctctcaaagaaa 39659982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 9467429 - 9467165
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||| | ||||||| ||  ||||   | ||||||    
T  9467429 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttcttcttagcaagttcgttaaaa 9467330  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||| |||||||||   ||||||||  ||||||||||||| | || ||| |        | || |||||||||||||||||||  ||||||||    
T  9467329 taaaggatgtagtaaatttatcaattgccctaggcagttggatttggatgcagtaatac-------aaagtaaataaaatggtttgataaagggattaaa 9467237  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||| ||||||| | |||||||||||||| ||||||||||| ||||||| ||| | |||||||    
T  9467236 acagatgatcaagactttcgagtcctctattgctcactctgagtaatttggctctcttatcttttaaagaaa 9467165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 456
Target Start/End: Complemental strand, 453951 - 453764
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| ||||||| |||||||||||||| |||| |||||| |||||||||||||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  453951 tgatagatatttgacaagtgtaccaaaaactatggaagtactaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 453852  T
Q  370 taaaggatgtattaaattt-atgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttga 456  Q
    |||||||| || ||||||| ||||||||||| |  ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  453851 taaaggatttagtaaattttatgggttgccccaggcagttggatttggttgcaataaaaagtaaataaaagaaaataaaatggtttga 453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 364 - 537
Target Start/End: Complemental strand, 13332359 - 13332186
Alignment:
Q  364 ttaaaataaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataatt 461  Q
    ||||||||||||||||| ||||||| ||||| ||||||||  |||||||||||| ||  | ||||| ||||  || || |||||||||||||||||||||    
T  13332359 ttaaaataaaggatgtagtaaattttatggggttgccctaggcagttggatttgatttta-taaaacgtaaacaa-agtaaataaaatggtttgataatt 13332262  T
Q  462 ggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaa 537  Q
    | ||||||||| ||||||||||||||||||| |||||||||||||  ||||||||||   ||||||||||||||||    
T  13332261 gaattaaaacatatgatcaagcctttcgaatcctctattgctcaccgtgagtaattttgttctcttctctctcaaa 13332186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 31986489 - 31986425
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31986489 caataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 31986425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 30645687 - 30645627
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatca 480  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30645687 caataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatca 30645627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 31981562 - 31981498
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31981562 caataaaaagtaaataacagaaaataaaacggtttgataattggattaaaacagatgatcaagcc 31981498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 41778790 - 41778859
Alignment:
Q  318 aagttcgtatcacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||||||||| ||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  41778790 aagttcgtattacaaggactgtttcaatttctactcggcaaaaacgttaaaataaaagatgtattaaatt 41778859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 12820690 - 12820777
Alignment:
Q  315 ataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgcccta 401  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||    |||||||||||||||| |||| ||||||||||||||||    
T  12820690 ataaagttcgtatccacatggactgtttcaatttctactcggcaaagatgttaaaataaaggatgtgttaagtttatgggttgcccta 12820777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 13097223 - 13097154
Alignment:
Q  319 agttcgtat-cacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||| |||| ||| | |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  13097223 agttcgtattcacagggactatttcaatttctactcggcaaaaacgttaaaataaaggatgtattaaatt 13097154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 24903249 - 24903317
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgt 339  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||  ||||  ||||||||||||    
T  24903249 ttgatagatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgttccacaaggattgt 24903317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 22654616 - 22654570
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataa 318  Q
    ||||| |||||||||||||||| ||| | ||||||||||||||||||    
T  22654616 tgatagatatttggcaagtgtatcaataactatcgaagtagtaataa 22654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 23619128 - 23619174
Alignment:
Q  269 tgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||| || ||||||||||||||||||  |||||||||||||||    
T  23619128 tgttgatagatttttggcaagtgtaccaaatactatcgaagtagtaa 23619174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 44008467 - 44008417
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||||||||||||||| ||||||| | ||||||||||  ||||||||||||    
T  44008467 tgtttcaatttctacttggcaaaaacgttaaaataaattatgtattaaatt 44008417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 14627539 - 14627494
Alignment:
Q  441 aaataaaatggtttgataattggattaaaacagatgatcaagcctt 486  Q
    ||||||| |||||| | |||| ||||||||||||||||||||||||    
T  14627539 aaataaattggtttaaaaattagattaaaacagatgatcaagcctt 14627494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 17012803 - 17012840
Alignment:
Q  278 atatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||||||||||||||| | |||||||||||||||    
T  17012803 atatttggcaagtgtaccaataactatcgaagtagtaa 17012840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 17544398 - 17544361
Alignment:
Q  278 atatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||||||||||||||| | |||||||||||||||    
T  17544398 atatttggcaagtgtaccaataactatcgaagtagtaa 17544361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 17931329 - 17931296
Alignment:
Q  282 ttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||||||||||||| |||||||||||||||    
T  17931329 ttggcaagtgtaccaaaaactatcgaagtagtaa 17931296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 12575299 - 12575339
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagta 311  Q
    ||||||||||||||||||||||||||||  | |||||||||    
T  12575299 ttgataaatatttggcaagtgtaccaaattcaatcgaagta 12575339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 13331838 - 13331886
Alignment:
Q  533 tcaaagaaaatctagtctttattcataattattcttgcttaatgttttt 581  Q
    |||| ||||| ||||||||||||||||||||||  ||||||||| ||||    
T  13331838 tcaatgaaaacctagtctttattcataattatttgtgcttaatgctttt 13331886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 24435385 - 24435338
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  24435385 ttgatagataattggcaagtgtaccaata-ctatcgaagtagtaataaa 24435338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 24445431 - 24445384
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  24445431 ttgatagataattggcaagtgtaccaata-ctatcgaagtagtaataaa 24445384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 271 - 541
Target Start/End: Complemental strand, 16547368 - 16547097
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  16547368 ttgataaaaatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggattgtttcaatttctactcggcaaaagcgttaaaa 16547269  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||| ||||||| || |||||||||||| ||||||| ||||    
T  16547268 taaaggatgtattaaatttaagggttgccctaggcagttggatttggttgcaataaaaagtaaataacagagaacaaaatggtttgacaattggactaaa 16547169  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    | | ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  16547168 aaaaatgatcaagcctttcgaatcctctattgctcactgtgaggaatttgcctctcttctctcacaaagaaa 16547097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 271 - 541
Target Start/End: Original strand, 16618294 - 16618565
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  16618294 ttgataaaaatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggattgtttcaatttctactcggcaaaagcgttaaaa 16618393  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||| ||||||| || |||||||||||| ||||||| ||||    
T  16618394 taaaggatgtattaaatttaagggttgccctaggcagttggatttggttgcaataaaaagtaaataacagagaacaaaatggtttgacaattggactaaa 16618493  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    | | ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  16618494 aaaaatgatcaagcctttcgaatcctctattgctcactgtgaggaatttgcctctcttctctcacaaagaaa 16618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 271 - 541
Target Start/End: Original strand, 3540923 - 3541192
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||  ||| | || |||||||  ||||   | |||||    
T  3540923 ttgataaatatttggcaagtgtaccaaaa-ctatcaaagtagtaataaagttcgtatccacgaggaccgttgtgaacttctacttagcaagttcgttaaa 3541021  T
Q  369 ataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3541022 ataaaggatgtattaa-tttatgggttgccctaagcagttggatttggttgcaataaaaagtaaataacaaaaaataaaatggtttgataattggattaa 3541120  T
Q  469 aacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    || ||||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||    
T  3541121 aatagatgatcaag-ctttcgaatcctctattgctcattgtgagtaatttgcctctcttctctctcaaagaaa 3541192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 280 - 492
Target Start/End: Complemental strand, 17152310 - 17152099
Alignment:
Q  280 atttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatg 378  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||||| |||  || |||||||||||||||||||||||||| |||||||||||||||    
T  17152310 atttgacaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacagagactgtttcaatttctactcggcaaaagcgttaaaataaaggatg 17152212  T
Q  379 tattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgat 478  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||||| ||||||| |||||||    
T  17152211 tattaaatttatgggttgccctaggcagttggatttggttgcaataaaaagtaaataacaaaaaataaaatgg-ttgataattgaattaaaatagatgat 17152113  T
Q  479 caagcctttcgaat 492  Q
    ||||||||||||||    
T  17152112 caagcctttcgaat 17152099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 271 - 541
Target Start/End: Complemental strand, 6964652 - 6964381
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||| || |||   ||| | ||||||||||  ||||   | |||||    
T  6964652 ttgataattatttggtaagtgtaccaaaaactatcgaagtagtaatgaagttcgtatccacgagggccgttgttaatttctacttagcaagttcgttaaa 6964553  T
Q  369 ataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
    |||||||||||| ||||||||||||||||||||   |||||||||||||  || |||||  |||   | || ||||||||||||||||||||||||||||    
T  6964552 ataaaggatgtagtaaatttatgggttgccctaggtagttggatttggtcgca-taaaacttaatacaaagtaaataaaatggtttgataattggattaa 6964454  T
Q  469 aacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  6964453 aacagatgatcaagcctttcgaatcctctattgctcacagtgagtaatttgcctctcttctctctcaaagaaa 6964381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 271 - 541
Target Start/End: Complemental strand, 38431758 - 38431487
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||  ||| | ||||||||||  ||||     |||||    
T  38431758 ttgatagatatttggaaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccatgaggaccgttgttaatttctacttagcaagttagttaaa 38431659  T
Q  369 ataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||| || |||||  |||   | || ||||||||||||||||||||| ||||||    
T  38431658 ataaaggatgtagtaaatttatgggttgccctaggcagttggatttggttgca-taaaacttaatataaagtaaataaaatggtttgataattagattaa 38431560  T
Q  469 aacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||||| |||||||||||||  || ||||||| ||||||||||||||||||||||    
T  38431559 aacagatgatcaagcctttcgaatcctctattgctcacagtgggtaattttcctctcttctctctcaaagaaa 38431487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 26809253 - 26809114
Alignment:
Q  135 agagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaagccatg 234  Q
    |||||| ||||  ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26809253 agagaattgaggaacaacctgttttcatggttaattttattttccatgctatttatttgtatctctatgtctagctaatttccctcttgattaagccatg 26809154  T
Q  235 agatgaatctattgtaatctttgatcacatagtttgttga 274  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26809153 agatgaatctattataatctttgatcacatagtttgttga 26809114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 434 - 541
Target Start/End: Original strand, 44017709 - 44017816
Alignment:
Q  434 taacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctct 533  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44017709 taacaggaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactgtgagtaatttgcctctcttctctct 44017808  T
Q  534 caaagaaa 541  Q
    ||||||||    
T  44017809 caaagaaa 44017816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 420 - 541
Target Start/End: Complemental strand, 26153366 - 26153245
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttg 519  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  26153366 caataaaaagtaaataacagaaaataaaatggtttgaaaattagattaaaacagatgatcaagccttttgaattctctattgctcaccgtgagtaatttg 26153267  T
Q  520 cctctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||||    
T  26153266 cctctcttctctctcaaagaaa 26153245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 6967394 - 6967337
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6967394 ttgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 6967337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 17866352 - 17866409
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17866352 ttgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 17866409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 17857880 - 17857936
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17857880 tgatagatatttggcaagtgtaccaaaagctatcgaaatagtaataaagttcgtatc 17857936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 8258099 - 8258037
Alignment:
Q  421 aataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  8258099 aataaaaagtaaataacagaaaataaaatggtttgataattgga-taaaacagatgataaagcc 8258037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 22083246 - 22083316
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  22083246 aagttcgtatccacagggactgtttcaatttctactcggcaaaagcattaaaataaaggatatattaaatt 22083316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 26809087 - 26809030
Alignment:
Q  545 tagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  26809087 tagtctttattcataattattcttgcttaatgcttttcttaatatcgtgtgtatgact 26809030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 23313318 - 23313377
Alignment:
Q  328 cacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  23313318 cacagggactgtttcaatttctactcggcataagcgttaaaataaaggatgtattaaatt 23313377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 8397321 - 8397371
Alignment:
Q  15 cacagacaaatatgcattcacgtttcggcacagtggaatcacgttttggaa 65  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  8397321 cacacacaaatatgcattcacgtttcggcacattggaatcacgttttggaa 8397371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 43549333 - 43549278
Alignment:
Q  427 aagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaag 482  Q
    |||||| || |||||||||||||||||| ||||||||||||||||| |||||||||    
T  43549333 aagtaaatagcagaaaataaaatggttttataattggattaaaacaaatgatcaag 43549278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 709777 - 709830
Alignment:
Q  266 gtttgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||| |||||| |||||||||||||||||||| | |||||||||||||||||||    
T  709777 gtttattgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 2252226 - 2252177
Alignment:
Q  270 gttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||||    
T  2252226 gttgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 2252177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 6214612 - 6214555
Alignment:
Q  545 tagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||| ||| |||||    
T  6214612 tagtcattattcataattattcttgcttaatgcttttcttaatatcgtttgtctgact 6214555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 26460819 - 26460771
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||||| |||||||||||||||| | |||||||||||||||||||    
T  26460819 ttgataaataattggcaagtgtaccaataactatcgaagtagtaataaa 26460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 23598528 - 23598575
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||    
T  23598528 tgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 23598575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 20100998 - 20100921
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgtttcaatttc 348  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||  ||||  |||||||| ||| | ||||||    
T  20100998 ttgatagaaatttggcaagtgtaccaataactatcgaagtagtaataaatatcgttccacaaggactgtattaatttc 20100921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 23108167 - 23108116
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaat-aaaggatgtattaaatt 387  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  23108167 tgtttcaatttctactcgacaaaagccttaaaataaaaggatgtatttaatt 23108116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 44017548 - 44017591
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  44017548 tgataaataattggcaagtgtaccaataactatcgaagtagtaa 44017591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 6214132 - 6214194
Alignment:
Q  343 aatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagt 407  Q
    |||||||||||| ||||||  ||||||||||| |||||||||||| |  ||||||||||| ||||    
T  6214132 aatttctactcgacaaaagtgttaaaataaagaatgtattaaattca--ggttgccctaagcagt 6214194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 602
Target Start/End: Original strand, 6964036 - 6964105
Alignment:
Q  533 tcaaagaaaatctagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||| ||||| |||||||||||||| |||||||  |||||||||||||| |||  || || |||||||||    
T  6964036 tcaatgaaaacctagtctttattcagaattattggtgcttaatgtttttcttatgattgtttgtatgact 6964105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 2349814 - 2349766
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| ||| |||||||||||| | |||||||||||||||||||    
T  2349814 ttgatagataattgacaagtgtaccaataactatcgaagtagtaataaa 2349766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 11825806 - 11825757
Alignment:
Q  201 atgtctagctaatttccctcttgattaagccatgagatgaatctattgtaat 252  Q
    ||||||||||||||||| | |||||||||||||  |||||| ||||||||||    
T  11825806 atgtctagctaatttccttgttgattaagccat--gatgaacctattgtaat 11825757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 37165916 - 37165960
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| || ||||||||||||||||||  |||||||||||||||    
T  37165916 ttgatagatttttggcaagtgtaccaaatactatcgaagtagtaa 37165960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 42965 - 42695
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtat-cacaaggattgtttcaatttctactcggcaaaagctttaaaat 370  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||||||| ||||||||||||||| | |||||||    
T  42965 tgatagatatttgtcaagtgtaccaaaagctatcgaagtcgtaataaagttcgtattcacagggactgtttcaacttctactcggcaaaaacgttaaaat 42866  T
Q  371 aaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaa 470  Q
    |||||||||||||||||||||| || |||||  || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42865 aaaggatgtattaaatttatggatttccctaggcatttggatttggttgcaataaaaagtaaataacagaaaataaaatggtttgataattggattaaaa 42766  T
Q  471 cagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  42765 cagatgatcaagcctttcgaatcctctattgctcactgtgagtaatttgcctctcttctctctaaaagaaa 42695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 53252 - 53213
Alignment:
Q  502 ctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  53252 ctcactgtgagtaattttcctctcttctctctcaaagaaa 53213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 271 - 537
Target Start/End: Complemental strand, 9691126 - 9690860
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    |||||| | |||||||||||||||||||| | |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||    
T  9691126 ttgatagaaatttggcaagtgtaccaaaacc-atcgaagtagtaataaagttcgtatccacagagattgtttcaatttctactcggcaaaagcgttaaaa 9691028  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||||||||||||||||||||||||  ||||| ||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9691027 taaaggatgtattaaatttatgggttgccctaggcagtttgatctgattgcaataaaaagtaaataacagaaaataaaatggtttgataattggattaaa 9690928  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaa 537  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  9690927 acagatgatcaagcctttcgaatcctctattgctcactgtgagtaatttgcctttcttctctctcaaa 9690860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 28562982 - 28562761
Alignment:
Q  28 gcattcacgtttcggcacagtggaatcacgttttggaacaaagtcacgccaggaaaaggaacgggaacacgagggaatagaaggcaacaggaaactcacg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  28562982 gcattcacgtttcggcacagtggaatcacgttttggaacaaagccacgccaggaaaaggaacgggaacgcgagggaatagaaggcaacag-aaactcacg 28562884  T
Q  128 aagcagtagagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgatta 227  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28562883 aagcagtagagacccgagccacaacatggtttcatggttaattttatttcccatgctattaatttgtatctctatgtctagctaatttccctcttgatta 28562784  T
Q  228 agccatgagatgaatctattgtaat 252  Q
    ||||||  |||||||||||||||||    
T  28562783 agccat--gatgaatctattgtaat 28562761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 28566550 - 28566329
Alignment:
Q  28 gcattcacgtttcggcacagtggaatcacgttttggaacaaagtcacgccaggaaaaggaacgggaacacgagggaatagaaggcaacaggaaactcacg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  28566550 gcattcacgtttcggcacagtggaatcacgttttggaacaaagccacgccaggaaaaggaacgggaacgcgagggaatagaaggcaacag-aaactcacg 28566452  T
Q  128 aagcagtagagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgatta 227  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28566451 aagcagtagagacccgagccacaacatggtttcatggttaattttatttcccatgctattaatttgtatctctatgtctagctaatttccctcttgatta 28566352  T
Q  228 agccatgagatgaatctattgtaat 252  Q
    ||||||  |||||||||||||||||    
T  28566351 agccat--gatgaatctattgtaat 28566329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 271 - 541
Target Start/End: Original strand, 33320678 - 33320948
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| || ||||||||||||||||||||||| ||||||    
T  33320678 ttgatatatatttggcaagtgtaccaaaagctatcgaagtaataataaagttcgtatccacagggactgcttcaatttctactcggcaaaagcgttaaaa 33320777  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    |||||||||||||||||||||||||  |||||  ||  ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  33320778 taaaggatgtattaaatttatgggtcaccctaggcaactggatttggttgcaataaaa-gtaaataacagaaaataaaatggtttgataattggattaaa 33320876  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||  || |||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||    
T  33320877 actaattatcaagcctttcgaatcctctattgctcattgtgagtaatttgcctctcttctctctcaaagaaa 33320948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 357 - 543
Target Start/End: Complemental strand, 26338261 - 26338075
Alignment:
Q  357 aaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttga 456  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  26338261 aaaagcgttagaataaaggatgtattaaatttatgggttgccctaggcagttggatttggttgcaataaaaagtaaataacagaaaataaaatggtttga 26338162  T
Q  457 taattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaaat 543  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  26338161 taattggattaaaacagatgatcaagcctttcgaatcctctattgctcactgtgagtaatttgcctctcttatctctcaaagaaaat 26338075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 272 - 541
Target Start/End: Original strand, 2499762 - 2500032
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  2499762 tgatagatatttggcaagtgtaccaaaagatatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 2499861  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||  |||   | || |||||||||||||||||||||||||||||    
T  2499862 taaaggatgtagtaaatttatgggttgccctaagcagttggatttggttgca-taaaacttaatacaaagtaaataaaatggtttgataattggattaaa 2499960  T
Q  470 acagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    | ||||||||||||||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  2499961 atagatgatcaagcctttcaaatcctctattgctcacagtgagtaatttgcctctcttctctctcaaagaaa 2500032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 271 - 541
Target Start/End: Complemental strand, 33921460 - 33921195
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| || ||||  ||| | ||||||||||  ||||   | |||||    
T  33921460 ttgatagatattcggcaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgtgaatttctacttagcaagttcgttaaa 33921362  T
Q  369 ataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
    || |||||||||||||||||||||||||||       ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  33921361 attaaggatgtattaaatttatgggttgcct------gttggatttggttgcaataaaaagtaaataatagaaaataaaatggtttgataattagattaa 33921268  T
Q  469 aacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||| |||||| ||| |||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  33921267 aacagatgatcaaacctttcaaatcctctattgctcactgtgagtaatttgtctctcttctctctaaaagaaa 33921195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 272 - 487
Target Start/End: Complemental strand, 21680721 - 21680506
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  21680721 tgatagatatttggcaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 21680623  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||| ||||||||||||||||||||  |||| | |||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  21680622 taaaggatgtactaaatttatgggttgccctaggcagtcg-atttggatgcaataaaaagtaaataacagaaaataaaatggttttataattggattaaa 21680524  T
Q  470 acagatgatcaagccttt 487  Q
    ||| ||||||||||||||    
T  21680523 acaaatgatcaagccttt 21680506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 318 - 520
Target Start/End: Original strand, 35432285 - 35432496
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatttgg 416  Q
    ||||||||||| ||| ||| ||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||  || ||||||||||    
T  35432285 aagttcgtatccacagggactgtttcaatttttactcgacaaaagcgttaaaataaatgatgtattaaatttatgggttgccctaggcaattggatttgg 35432384  T
Q  417 tt--------ccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcacta 508  Q
    ||        |  | |||||  ||  || || ||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||      
T  35432385 ttttataaaacttaaaaaaaaaaaaaaaaagtaaataaaatagtttgataattggattaaaacagatgatcaagcctttcgaatcatctattgctcaccg 35432484  T
Q  509 tgagtaatttgc 520  Q
    ||| ||||||||    
T  35432485 tgaataatttgc 35432496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 19686383 - 19686319
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19686383 caataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 19686319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 19689766 - 19689702
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19689766 caataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 19689702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 272 - 401
Target Start/End: Original strand, 1810190 - 1810321
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgta-tcacaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||| | ||||||||||   |||   | ||||||    
T  1810190 tgataactatttgacaagtgtaccaaaagctatcgaagtagtaataaagttcgtattcacgaggaccgttgttaatttctacttaacaagttcgttaaaa 1810289  T
Q  370 taaaggatgtattaaatttatgggttgcccta 401  Q
    ||||||||||| ||||||||||||||||||||    
T  1810290 taaaggatgtagtaaatttatgggttgcccta 1810321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 2453494 - 2453433
Alignment:
Q  422 ataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagc 483  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2453494 ataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagc 2453433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 34406095 - 34406006
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtat-cacaaggattgtt-tcaatttctactcggcaa 358  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| | ||||||||||||||||    
T  34406095 ttgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggaccgttgttaatttctactcggcaa 34406006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 35432833 - 35432776
Alignment:
Q  545 tagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  35432833 tagtctttattcataattattcttgcttaatgcttttcttaatatcgtgtgtatgact 35432776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 17944916 - 17944866
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  17944916 tgtttcaatttctactcggcaaaagcattaaaataaaggatatattaaatt 17944866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 536
Target Start/End: Complemental strand, 36330911 - 36330820
Alignment:
Q  444 taaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaa 536  Q
    |||| |||||||| |||| ||||||||||||||| ||| | |||||||| |||| |||| |||| ||| ||||||||  ||||||||||||||    
T  36330911 taaattggtttgaaaattagattaaaacagatgaacaaac-tttcgaatcctctgttgcgcactgtgaataatttgctcctcttctctctcaa 36330820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 26727299 - 26727252
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||    
T  26727299 tgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 26727252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 25185744 - 25185695
Alignment:
Q  269 tgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  25185744 tgttgatagatatttgacaagtgtaccaaaa-ctatcgaagtagtaataaa 25185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 42062568 - 42062624
Alignment:
Q  159 tcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttc 216  Q
    |||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  42062568 tcatggttaattttattttc-acgctctttatttgtatctctatgtctagctaatttc 42062624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 20056193 - 20056160
Alignment:
Q  282 ttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||||||||||||| |||||||||||||||    
T  20056193 ttggcaagtgtaccaaaaactatcgaagtagtaa 20056160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 268 - 541
Target Start/End: Complemental strand, 4627 - 4353
Alignment:
Q  268 ttgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagcttta 366  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||| ||| ||| ||||||||||||||| |||||| |||    
T  4627 ttgttgatagatatttggcaagtgtacaaaaaactatcgaagtagtaataaagtttgtatccacagggactgtatcaatttctactcggaaaaagcgtta 4528  T
Q  367 aaataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatt 466  Q
    |||||||||||||||||||||||||||||||||||   | |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  4527 aaataaaggatgtattaaatttatgggttgccctaggaaattggatttggttgcaataaaaagtaaataacataaaataaaatggtttgataattggatt 4428  T
Q  467 aaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||||    
T  4427 aaaacagatgatcaagcctttcgaatcctctattgctcactgtaagtaatttgcctgtcttctctctcaaagaaa 4353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 2783618 - 2783838
Alignment:
Q  29 cattcacgtttcggcacagtggaatcacgttttggaacaaagtcacgccaggaaaaggaacgggaacacgagggaatagaaggcaacaggaaactcacga 128  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2783618 cattcacgtttcggcacagtggaatcacgttttggaacaaagccacgccaggaaaaggaacgggaacgcgagggaatagaaggcaacag-aaactcacga 2783716  T
Q  129 agcagtagagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaa 228  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2783717 agcagtagagaaccgagccacaacatggtttcatggttaattttatttcccatgctattaatttgtatctctatgtctagctaatttccctcttgattaa 2783816  T
Q  229 gccatgagatgaatctattgtaat 252  Q
    |||||  |||||||||||||||||    
T  2783817 gccat--gatgaatctattgtaat 2783838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 27055236 - 27054966
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||| |||||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  27055236 tgataaatatttggcaagcataccaaaa-ctatcgaagtagtaataaatttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 27055138  T
Q  370 taaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatta 467  Q
    |||| |||||| ||||||| ||||| ||||||||  |||||||||||| ||  | ||||| ||||  || ||  |||||||| |||||||||||||||||    
T  27055137 taaaagatgtagtaaattttatggggttgccctaggcagttggatttgatttta-taaaacgtaaacaa-agtcaataaaatagtttgataattggatta 27055040  T
Q  468 aaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||    
T  27055039 aaacagatgatcaagcctttcgaatcctctattgctcaccgtgagtaatttggctctcttctctctcaaagaaa 27054966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 434 - 541
Target Start/End: Complemental strand, 28327645 - 28327538
Alignment:
Q  434 taacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctct 533  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28327645 taacaggaaataaaatggtttgataattggattaaaacagatgatcaagtctttcgaattctctattgctcactgtgagtaatttgcctctcttctctct 28327546  T
Q  534 caaagaaa 541  Q
    ||||||||    
T  28327545 caaagaaa 28327538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 434 - 541
Target Start/End: Complemental strand, 28330970 - 28330863
Alignment:
Q  434 taacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctct 533  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28330970 taacaggaaataaaatggtttgataattggattaaaacagatgatcaagtctttcgaattctctattgctcactgtgagtaatttgcctctcttctctct 28330871  T
Q  534 caaagaaa 541  Q
    ||||||||    
T  28330870 caaagaaa 28330863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 434 - 541
Target Start/End: Complemental strand, 3306050 - 3305944
Alignment:
Q  434 taacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctct 533  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3306050 taacaggaaataaaatggtttgataattggattaaa-cagatgatcaagcctttcgaattctctattgctcactgtgagtaatttgcctctcttctctct 3305952  T
Q  534 caaagaaa 541  Q
    ||| ||||    
T  3305951 caaggaaa 3305944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 420 - 541
Target Start/End: Complemental strand, 4250601 - 4250480
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttg 519  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||||||||||||| ||| |||||||    
T  4250601 caataaaatgtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagattttcaaatcctctattgctcactgtgattaatttg 4250502  T
Q  520 cctctcttctctctcaaagaaa 541  Q
    ||||||| ||||||||||||||    
T  4250501 cctctctcctctctcaaagaaa 4250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 318 - 482
Target Start/End: Complemental strand, 9155123 - 9154959
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttat-gggttgccctaaacagttggatttg 415  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||| ||  ||| | |||| |    
T  9155123 aagttcgtatccacagggactgtttcaatttctactcggcaaaaacgttaaaatcaaggatgtattaaatttatagggttgccttaggcag-tagattag 9155025  T
Q  416 gttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaag 482  Q
    | | |||| |||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||    
T  9155024 ggtgcaat-aaaagtaaataacaggaaataaaatagtttgataatgggattaaaacagatgatcaag 9154959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 337 - 482
Target Start/End: Complemental strand, 9158285 - 9158140
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttat-gggttgccctaaacagttggatttggttccaataaaaagtaagta 435  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||   |||   |||  | | ||||||||||||| ||    
T  9158285 tgtttcaatttctactcggcaaaaacgttaaaatcaaggatgtattaaatttatagggttgccctaggtagtaa-attaaggtgcaataaaaagtaaata 9158187  T
Q  436 acagaaaataaaatggtttgataattggattaaaacagatgatcaag 482  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||    
T  9158186 acaggaaataaaatggtttgataatgagattaaaacagatgatcaag 9158140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 318 - 484
Target Start/End: Complemental strand, 18551984 - 18551819
Alignment:
Q  318 aagttcgtatca-caaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatttgg 416  Q
    |||||||||||| | |||| ||||| |||||||||  ||||||  | ||||||| |||||||| ||||||||||||||||| |||  ||||| |||||||    
T  18551984 aagttcgtatcaactaggactgttttaatttctacaaggcaaagacattaaaattaaggatgtgttaaatttatgggttgctctaggcagttagatttgg 18551885  T
Q  417 ttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    || || |||||  |||  || || |||||||||||||||||||||||||||||||| |||||||||||    
T  18551884 ttgca-taaaacttaaacaa-agtaaataaaatggtttgataattggattaaaacaaatgatcaagcc 18551819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 54736116 - 54736179
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagc 483  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54736116 caataaaaagtaaataacagaaaataaaatgatttgataattggattaaaacagatgatcaagc 54736179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 19869344 - 19869215
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtat-cacaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    |||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||| ||||  ||| | ||||||||||  ||||   | |||||    
T  19869344 ttgatagatatttggcaagtgtactaaaatctatcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaa 19869245  T
Q  369 ataaaggatgtattaaatttatgggttgcc 398  Q
    |||||||||||| |||||||||||||||||    
T  19869244 ataaaggatgtagtaaatttatgggttgcc 19869215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 18883426 - 18883363
Alignment:
Q  421 aataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18883426 aataaaaggtaaataacagaaaataaaatggtttgataattggattaaaacacatgatcaagcc 18883363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 25492263 - 25492132
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtat-cacaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| ||| ||| |||||||||||||||||||| || |||||||||||||||||| ||| ||||| ||| | ||||||||||  ||||   | ||||||    
T  25492263 tgatagataattgacaagtgtaccaaaagctatcaaaatagtaataaagttcgtatccacgaggatcgttgttaatttctacttagcaagttcattaaaa 25492164  T
Q  370 taaaggatgtattaaatttatgggttgcccta 401  Q
    |||| |||||| ||||||||||||||||||||    
T  25492163 taaaagatgtagtaaatttatgggttgcccta 25492132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 414
Target Start/End: Original strand, 36036711 - 36036855
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaa-gctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| |||||||||||||||  ||||| | |||||||||||||||||||||  |||| | | ||| |||||||||||||| ||  ||||||| ||||||    
T  36036711 tgatagatatttggcaagtgtgtcaaaaagttatcgaagtagtaataaagtttatatctatagggactgtttcaatttctattcaacaaaagcgttaaaa 36036810  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggattt 414  Q
    ||||  |||||||||||| |  ||||||||||  |||||||||||    
T  36036811 taaattatgtattaaattcaatggttgccctaggcagttggattt 36036855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 42354316 - 42354380
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| |||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  42354316 caataaaaagtaaataacaagaaataaaatggtttgatgattggattaaaacagatgatcaagcc 42354380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 16314350 - 16314400
Alignment:
Q  269 tgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  16314350 tgttgatagatatttggcaagtgtaccaataactatggaagtagtaataaa 16314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 16414516 - 16414566
Alignment:
Q  269 tgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  16414516 tgttgatagatatttggcaagtgtaccaataactatggaagtagtaataaa 16414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 18495344 - 18495394
Alignment:
Q  269 tgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||||||||    
T  18495344 tgttgatagatatttggcaagtgtaccaataactatggaagtagtaataaa 18495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 35412247 - 35412304
Alignment:
Q  159 tcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttcc 217  Q
    |||||||||||||||||| | | ||| ||| ||||||||||||||||||||||||||||    
T  35412247 tcatggttaattttattttc-acgctctttatttgtatctctatgtctagctaatttcc 35412304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 600
Target Start/End: Complemental strand, 36037314 - 36037264
Alignment:
Q  550 tttattcataattattcttgcttaatgtttttgttaatatcgtatgtatga 600  Q
    ||||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  36037314 tttattcataattattcttgcttaatgcttttcataatatcgtgtgtatga 36037264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 50096978 - 50096909
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||| ||| ||||||||||||||||||| ||||  || ||||||||||||||||||||||    
T  50096978 aagttcgtatccacagggactgtttcaatttctactcggaaaaaagtt-aaaataaaggatgtattaaatt 50096909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 18645167 - 18645111
Alignment:
Q  159 tcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttc 216  Q
    |||||||||||||||||| | | ||| ||| |||||||||||||||||||||||||||    
T  18645167 tcatggttaattttattttc-acgctctttatttgtatctctatgtctagctaatttc 18645111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 5886746 - 5886794
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  5886746 ttgatagataattggcaagtgtaccaataactatcgaagtagtaataaa 5886794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 5896730 - 5896778
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  5896730 ttgatagataattggcaagtgtaccaataactatcgaagtagtaataaa 5896778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 536
Target Start/End: Original strand, 26822186 - 26822280
Alignment:
Q  441 aaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaa 536  Q
    ||||||| |||||||| |||| |||||||| | ||||||||||| ||| |||  |||||||| |||| ||| ||||||||  ||||||| ||||||    
T  26822186 aaataaattggtttgagaattagattaaaataaatgatcaagcc-ttcaaatcatctattgcacactgtgaataatttgctcctcttctttctcaa 26822280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 3306214 - 3306156
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagt-aataaagttcgtatc 328  Q
    |||||| |||||||||||||||||||| | ||||||||||| | ||| |||||||||||    
T  3306214 ttgatagatatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatc 3306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 4225623 - 4225664
Alignment:
Q  278 atatttggcaagtgtaccaaaagctatcgaagtagtaataaag 320  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  4225623 atatttggcaagtgtaccaata-ctatcgaagtagtaataaag 4225664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 6173123 - 6173160
Alignment:
Q  282 ttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||||||||||| | |||||||||||||||||||    
T  6173123 ttggcaagtgtaccaataactatcgaagtagtaataaa 6173160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 20536332 - 20536376
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| |||||||| ||||||||||||| |||| ||||||||||    
T  20536332 ttgatagatatttggaaagtgtaccaaaaactattgaagtagtaa 20536376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 28327807 - 28327763
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||    
T  28327807 ttgatagataattggcaagtgtaccaataactatcgaagtagtaa 28327763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 34983540 - 34983584
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| || ||||||||||||||||||  |||||||||||||||    
T  34983540 ttgatagatgtttggcaagtgtaccaaatactatcgaagtagtaa 34983584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 11059292 - 11059513
Alignment:
Q  29 cattcacgtttcggcacagtggaatcacgttttggaacaaagtcacgccaggaaaaggaacgggaacacgagggaatagaaggcaacaggaaactcacga 128  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  11059292 cattcacgtttcggcacagtggaatcacgttttggaacaaagccacgccaggaaaaggaacgggaacgcgagggaatagaaggcaattggaaactcacga 11059391  T
Q  129 agcagtagagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaa 228  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11059392 agcagtagagaaccgagcaacaacatggtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaa 11059491  T
Q  229 gccatgagatgaatctattgtaat 252  Q
    |||||  |||||| ||||||||||    
T  11059492 gccat--gatgaacctattgtaat 11059513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 13517803 - 13518021
Alignment:
Q  30 attcacgtttcggcacagtggaatcacgttttggaacaaagtcacgccaggaaaaggaacgggaacacgagggaatagaaggcaacaggaaactcacgaa 129  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  13517803 attcacgtttcggcac--tggaatcacgttttggaacaaagccacgccaggaaaaggaacgggaacgtgagggaatagaaggcaacaggaaactcacgaa 13517900  T
Q  130 gcagtagagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaag 229  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13517901 gcagtagagaaccgagccacaacatggtttcatggttaattttatttcccatgctatttatttgtatctctatgtctagctaatttccctcttgattaag 13518000  T
Q  230 ccatgagatgaatctattgtaat 252  Q
    | ||  |||||| ||||||||||    
T  13518001 ctat--gatgaacctattgtaat 13518021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 272 - 541
Target Start/End: Original strand, 38315801 - 38316071
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaat 370  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| || ||||  |||   | |||||||  ||||   | |||||||    
T  38315801 tgataaatatttggtaagtgtatcaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaattctacttagcaagttcgttaaaat 38315899  T
Q  371 aaaggatgtattaaatttat--gggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
     ||||||||| |||||||    |||||| ||||  ||||||||||||||| || |||||  |||   | || ||||||||||||||||||||||||||||    
T  38315900 taaggatgtagtaaattttacggggttgtcctaggcagttggatttggttgca-taaaacttaatacaaagtaaataaaatggtttgataattggattaa 38315998  T
Q  469 aacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  38315999 aacagatgatcaagcctttcgaatcctctattgctcacagtgagtaatttgcctctcttctctctcaaagaaa 38316071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 434 - 541
Target Start/End: Original strand, 40677689 - 40677796
Alignment:
Q  434 taacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctct 533  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40677689 taacaggaaataaaatggtttgataattggatcaaaacagatgatcaagcctttcgaattctctattgctcactgtgagtaatttgcctctcttctctct 40677788  T
Q  534 caaagaaa 541  Q
    ||||||||    
T  40677789 caaagaaa 40677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 272 - 456
Target Start/End: Complemental strand, 29436113 - 29435926
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| ||| ||| |||||||| ||||| ||||||||||| |||||||||||||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  29436113 tgatagataattgacaagtgtatcaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 29436014  T
Q  370 taaaggatgtattaaattt-atgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttga 456  Q
    ||||||||||| ||||||| ||||||||| |||  ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  29436013 taaaggatgtagtaaattttatgggttgcactaggcagttggatttggttgcaataaaaagtaaataaaagaaaataaaatggtttga 29435926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 1506542 - 1506606
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  1506542 caataaaaagtaaataataggaaataaaatggtttgatgattggattaaaacagatgatcaagcc 1506606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 272 - 413
Target Start/End: Original strand, 13572041 - 13572186
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaagga---ttgtttcaatttctactcggcaaaagctttaa 367  Q
    |||||||| | || ||| ||||||||||||||||||||||||||||||||||||||| || ||||   |||||    ||||||||  |||||  | ||||    
T  13572041 tgataaatttctgccaaatgtaccaaaagctatcgaagtagtaataaagttcgtatctacgaggaccgttgttaatttttctacttagcaaattcgttaa 13572140  T
Q  368 aataaaggatgtattaaatttatgggttgccctaaacagttggatt 413  Q
    ||||||||||||| | |||||||||||||| |||  ||||||||||    
T  13572141 aataaaggatgtagtgaatttatgggttgcactaggcagttggatt 13572186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 30720070 - 30720020
Alignment:
Q  337 tgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  30720070 tgtttcaatttctactcggcaaaagcgttaaaataaaggatatattaaatt 30720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 1503338 - 1503399
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaa 481  Q
    ||||||||||||| ||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  1503338 caataaaaagtaaataataggaaataaaatggtttgatgattgaattaaaacagatgatcaa 1503399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 4578043 - 4577974
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaat-----ggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| ||||||||||||||||     ||||||||||||| ||||||||||||||| |||||    
T  4578043 caataaaaagtaaataacagaaaataaaataaaatggtttgataattgaattaaaacagatgattaagcc 4577974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 40139304 - 40139235
Alignment:
Q  449 tggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttg 519  Q
    |||||||| ||||  ||||||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  40139304 tggtttgaaaattatattaaaacaaatgatcaagcctt-cgaatcctctattgctcactgtgaataatttg 40139235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 18939247 - 18939200
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  18939247 tgatagataattggcaagtgtaccaataactatcgaagtagtaataaa 18939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 22592866 - 22592819
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| |||||||| ||||||||||| | |||||||||||||||||||    
T  22592866 tgatagatatttggtaagtgtaccaataactatcgaagtagtaataaa 22592819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 251
Target Start/End: Complemental strand, 24385600 - 24385570
Alignment:
Q  221 ttgattaagccatgagatgaatctattgtaa 251  Q
    |||||||||||||||||||||||||||||||    
T  24385600 ttgattaagccatgagatgaatctattgtaa 24385570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 251
Target Start/End: Complemental strand, 32074774 - 32074744
Alignment:
Q  221 ttgattaagccatgagatgaatctattgtaa 251  Q
    |||||||||||||||||||||||||||||||    
T  32074774 ttgattaagccatgagatgaatctattgtaa 32074744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 10601191 - 10601146
Alignment:
Q  271 ttgataaatattt-ggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||    
T  10601191 ttgataaatattttggcaagtgtaccaaatactatcgaagtagtaa 10601146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 37279443 - 37279488
Alignment:
Q  270 gttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    ||||||| || ||||||||||||||||| | |||||||||||||||    
T  37279443 gttgatagatttttggcaagtgtaccaataactatcgaagtagtaa 37279488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 602
Target Start/End: Complemental strand, 38316416 - 38316347
Alignment:
Q  533 tcaaagaaaatctagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||| ||||| |||||||||||||| |||||||  |||||||||||||| |||  || || |||||||||    
T  38316416 tcaatgaaaacctagtctttattcagaattatttgtgcttaatgtttttcttatgattgtttgtatgact 38316347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 1386190 - 1386234
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    ||||||||  ||||||||||||||||||  |||||||||||||||    
T  1386190 ttgataaaattttggcaagtgtaccaaatactatcgaagtagtaa 1386234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 16790523 - 16790567
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| || ||||||||||||||||||  |||||||||||||||    
T  16790523 ttgatagatttttggcaagtgtaccaaatactatcgaagtagtaa 16790567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 24384924 - 24384963
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagta 311  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  24384924 ttgatagatatttggcaagtgtaccaaaa-ctatcgaagta 24384963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 40677527 - 40677571
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||    
T  40677527 ttgatagataattggcaagtgtaccaataactatcgaagtagtaa 40677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 271 - 507
Target Start/End: Original strand, 90297 - 90534
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaa 369  Q
    |||||| | |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||    
T  90297 ttgatagaaatttggcaagtgtaccaaaagctatcgaagtactaataaagttcgtatccacatggactgtttcaatttctactcggcaaaagcgttaaaa 90396  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  90397 taaaggatgtattaaatttatgggttgccctaggcaattggatttggttgcaataaaaagtaaataacagaaaataaaatgggttgataattggattaaa 90496  T
Q  470 acagatgatcaagcctttcgaattctctattgctcact 507  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  90497 acagatgatcaagcctttcaaatcctctattgctcact 90534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 6e-91; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 270 - 473
Target Start/End: Complemental strand, 37177001 - 37176799
Alignment:
Q  270 gttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaa 368  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  37177001 gttgataaatatttggcaagtgtaccaaaagctatcga--tagtaataaagttcgtatccacaaggactgtttcaatttctactcggcaaaagctttaaa 37176904  T
Q  369 ataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37176903 ataaaggatgtattaaatttatgggttgccctagacagttggatttggttgcaataaaaagtaaataacagaaaataaaatggtttgataattggattaa 37176804  T
Q  469 aacag 473  Q
    |||||    
T  37176803 aacag 37176799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 272 - 536
Target Start/End: Complemental strand, 13979497 - 13979232
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgtt-tcaatttctactcggcaaaagctttaaaat 370  Q
    ||||| ||||||||||||||||| || | ||| |||||||||||||||  | ||  ||||||||  ||| | |||| |||||  ||||   | || | ||    
T  13979497 tgatagatatttggcaagtgtactaataactaacgaagtagtaataaatattgttccacaaggaccgttgttaattcctacttagcaagttcgttgacat 13979398  T
Q  371 aaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaa 470  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13979397 aaaggatgtagtaaatttatgggttaccctaggcagttggatttggttgcaataaaaagtaaataacagaaaataaaatggtttgataattggattaaaa 13979298  T
Q  471 cagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaa 536  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  13979297 cagatgatcaagcctttcgaatcctctattgttcactgtgagtaatttgcctctcttctctctcaa 13979232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 72 - 255
Target Start/End: Original strand, 2541299 - 2541481
Alignment:
Q  72 cacgccaggaaaaggaacgggaacacgagggaatagaaggcaacaggaaactcacgaagcagtagagaactgagcgacaacatggtttcatggttaattt 171  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  2541299 cacgccaggaaaaggaacaggaacgcgagggaattgaaggcaacagaaaactcacgaagcagtggagaaatgaggaacaacatggtttcatggttaattt 2541398  T
Q  172 tatttcccatgctatttgtttgtatctctatgtctagctaatttccctcttgattaagccatgagatgaatctattgtaatctt 255  Q
    ||||| ||||||||||| ||||||| ||||||| ||||||||||| || ||| || || | | ||||||||||| |||||||||    
T  2541399 tattttccatgctatttatttgtatttctatgtttagctaatttctctattggttgagac-ttagatgaatctaatgtaatctt 2541481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 272 - 541
Target Start/End: Complemental strand, 15851537 - 15851267
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  15851537 tgataaagatttggcaagtgtaccaaaa-ctatcgaagtaatagtaaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 15851439  T
Q  370 taaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatta 467  Q
    ||||||||||| ||||||| ||||| ||||||||  | |||||||||||||  | ||||| ||||  || || ||||||||||||||||||||||| |||    
T  15851438 taaaggatgtagtaaattttatggggttgccctaggctgttggatttggtttta-taaaacgtaaacaa-agtaaataaaatggtttgataattgggtta 15851341  T
Q  468 aaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||| |||| ||||||||||| |  ||||||||||| |||||||||||||||||||||    
T  15851340 aaacagatgatcaagccttttgaatcctctattgctctccgtgagtaatttggctctcttctctctcaaagaaa 15851267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 271 - 482
Target Start/End: Original strand, 33400074 - 33400286
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| || || |  ||| | ||||||| ||  ||||   | |||||    
T  33400074 ttgatagatatttggcaagtgtaccaaaagctatcgaggtagtaataaagttcgtatccacgagaaccgttgttaatttctgcttagcaagttcgttaaa 33400173  T
Q  369 ataaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaa 468  Q
    |||||||||||| |||||||||||||||||||| ||||| | ||| || | ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  33400174 ataaaggatgtaataaatttatgggttgccctagacagtag-attagggtgcaataaaaagtaaataacagaaaataaaatcgtttgataattggattaa 33400272  T
Q  469 aacagatgatcaag 482  Q
    | ||||||||||||    
T  33400273 agcagatgatcaag 33400286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 422 - 541
Target Start/End: Complemental strand, 19929094 - 19928974
Alignment:
Q  422 ataaaaagtaagtaacagaaaataaaatggtttgataattggatt-aaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgc 520  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  19929094 ataaaaattaaataacagaaaataaaatggtttgataattggatttaaaacagatgatcaagcctttcgaatcctctattgctcactgtgagtaatttgc 19928995  T
Q  521 ctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||    
T  19928994 ctctcttctctctcaaagaaa 19928974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 26703415 - 26703511
Alignment:
Q  441 aaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaa 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  26703415 aaataaaatggtttgataattggattaaaacagatgatcaagccttttgaatcctctattgctcactgtgagtaatttggctctcttctctctcaaa 26703511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 37176586 - 37176697
Alignment:
Q  10 aggagcacagacaaatatgcattcacgtttcggcacagtggaatcac-gttttggaacaaagtcacgccaggaaaaggaacgggaacacgagggaataga 108  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  37176586 aggaacacacacaaatatgtattcacgtttcggcacagtggaatcgccgttttaaaacaaagccacgccaggaaaaggaacgggaacacgagggaataga 37176685  T
Q  109 aggcaacaggaa 120  Q
    ||||||||||||    
T  37176686 aggcaacaggaa 37176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 10386145 - 10386083
Alignment:
Q  422 ataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10386145 ataaaaagtaaataacagaaaataaaatggtttgataattgaattaaaacagatgatcaagcc 10386083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 647202 - 647259
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  647202 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatc 647259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 650474 - 650531
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  650474 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatc 650531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 10248028 - 10247968
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatca 480  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  10248028 caataaaaagtaaataacataaaataaaatggtttgataattggattaaaacagatgatca 10247968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 420 - 482
Target Start/End: Original strand, 11702492 - 11702554
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaag 482  Q
    ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||    
T  11702492 caataaaaagtaaataataggaaataaaatggtttgatgattggattaaaacagatgatcaag 11702554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 24605051 - 24605121
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  24605051 aagttcgtatccacaaggactgtttcaatttctacttggcaaaaacgttaaaataaaggatgtattaaatt 24605121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 7395359 - 7395279
Alignment:
Q  135 agagaactgagcgacaacatggtttcatggttaattttatttcccatgctatttgtttgtatctctatgtctagctaattt 215  Q
    |||||| ||||  |||||||| |||  |||||||||||||||  |||||||||| ||||||||||||||||||| ||||||    
T  7395359 agagaattgaggaacaacatgtttttgtggttaattttatttttcatgctatttatttgtatctctatgtctagttaattt 7395279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 33400288 - 33400330
Alignment:
Q  440 aaaataaaatggtttgataattggattaaaacagatgatcaag 482  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  33400288 aaaataaaatggtttgataattggattaaagcagatgatcaag 33400330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 7394674 - 7394769
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatt 413  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||  | ||||||| |||||||| ||||| |||| ||||||||||  ||||||||||    
T  7394674 aagttcgtatccacatggactgtttcaatttctactcagcaaagacattaaaattaaggatgtgttaaaattat-ggttgccctaggcagttggatt 7394769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 3719261 - 3719308
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||    
T  3719261 tgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 3719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 19929242 - 19929195
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||    
T  19929242 tgatagatatttggcaagtgtaccaataactatcgaagtagtaataaa 19929195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 536
Target Start/End: Original strand, 21217496 - 21217590
Alignment:
Q  441 aaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaa 536  Q
    ||||||| |||||||| |||| ||||||||||||| ||||| || ||| ||| ||||||||| |||| ||| |||||||  | |||||||||||||    
T  21217496 aaataaattggtttgaaaattagattaaaacagataatcaatcc-ttcaaatcctctattgcgcactgtgaataatttgattttcttctctctcaa 21217590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 541
Target Start/End: Complemental strand, 37176797 - 37176762
Alignment:
Q  506 ctatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||||||||||||||||||    
T  37176797 ctatgagtaatttgcctctcttctctctcaaagaaa 37176762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 8871464 - 8871513
Alignment:
Q  266 gtttgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||||    
T  8871464 gttttttgatagatatctggcaagtgtaccaaaaactatcgaagtagtaa 8871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 14702260 - 14702212
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  14702260 ttgatagatatttggcaaatgtaccaataactatcgaagtagtaataaa 14702212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 22093533 - 22093481
Alignment:
Q  160 catggttaattttatttcccatgctatttgtttgtatctctatgtctagctaa 212  Q
    ||||||||||||||||| ||| | ||||| ||||||||||||||| |||||||    
T  22093533 catggttaattttattttccaagatatttatttgtatctctatgtgtagctaa 22093481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 602
Target Start/End: Complemental strand, 24605566 - 24605514
Alignment:
Q  550 tttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||||||||||||||| |||||||||| |||| |||||||| | |||||||||    
T  24605566 tttattcataattattattgcttaatgcttttcttaatatcatgtgtatgact 24605514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 49639581 - 49639629
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  49639581 ttgatagataattggcaagtgtaccaataactatcgaagtagtaataaa 49639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 3734666 - 3734619
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  3734666 tgatagataattggcaagtgtaccaataactatcgaagtagtaataaa 3734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 7395207 - 7395156
Alignment:
Q  548 tctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatg 599  Q
    ||||||||||||||||||||||||| ||| |||| |||||||| | ||||||    
T  7395207 tctttattcataattattcttgcttgatgcttttcttaatatcatgtgtatg 7395156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 11561159 - 11561123
Alignment:
Q  283 tggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||||||| |||| |||||||||||||||||||    
T  11561159 tggcaagtgtacaaaaaactatcgaagtagtaataaa 11561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 24151029 - 24150985
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| || ||||||||||||||||||  |||||||||||||||    
T  24151029 ttgatagatttttggcaagtgtaccaaatactatcgaagtagtaa 24150985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 29325178 - 29325134
Alignment:
Q  272 tgataaatattt-ggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||||||| |||||||||||||||  |||||||||||||||    
T  29325178 tgataaatattttggcaagtgtaccaaatactatcgaagtagtaa 29325134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 38283246 - 38283290
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| || ||||||||||||||||||  |||||||||||||||    
T  38283246 ttgatagatttttggcaagtgtaccaaatactatcgaagtagtaa 38283290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 40616573 - 40616617
Alignment:
Q  272 tgataaatattt-ggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||||||||| |||||||||||||||  |||||||||||||||    
T  40616573 tgataaatattttggcaagtgtaccaaatactatcgaagtagtaa 40616617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 49636289 - 49636365
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgtttcaatttc 348  Q
    ||||| ||| |||||||||||| ||| | |||||||||||||||||||  ||||  |||||||| ||| | ||||||    
T  49636289 tgatagataattggcaagtgtatcaataactatcgaagtagtaataaatatcgttccacaaggactgtattaatttc 49636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 272 - 541
Target Start/End: Original strand, 19509 - 19780
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    |||||||||||||||||||||||||||| || || |||||||||||||||||||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  19509 tgataaatatttggcaagtgtaccaaaa-ctgtcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 19607  T
Q  370 taaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatta 467  Q
    ||||||||||| ||||||| ||||| ||||||||  ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19608 taaaggatgtagtaaattttatggggttgccctaggcagttggatttggttgcaataaaaagtaa-taacagaaaataaaatggtttgataattggatta 19706  T
Q  468 aaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19707 aaacagatgatcaagactttcgaatactctattgctcacaatgagtaatttgcctctcttctctctcaaagaaa 19780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 270 - 541
Target Start/End: Complemental strand, 18392760 - 18392486
Alignment:
Q  270 gttgataa-atatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagcttta 366  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||| | ||||||||||  ||||     |||    
T  18392760 gttgataatataattggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagtttgtta 18392661  T
Q  367 aaataaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattgga 464  Q
    ||||||||||| || ||||||| ||||| ||||||||  |||||||||||||||  | ||||| ||||  || || ||||||||||||||||||||||||    
T  18392660 aaataaaggatctagtaaattttatggggttgccctagccagttggatttggtttta-taaaacgtaaacaa-agtaaataaaatggtttgataattgga 18392563  T
Q  465 ttaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  18392562 ttaaaacagatgatcaagcctttcgaatcctctattgctcaccatgagtaatttgcctatcttctctctcaaagaaa 18392486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 271 - 541
Target Start/End: Original strand, 34552437 - 34552708
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||  ||| | ||||||||||  ||||     |||||    
T  34552437 ttgatagatatttgacaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagtttgttaaa 34552535  T
Q  369 ataaaggatgtattaaattt-atggg-ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatt 466  Q
    |||||||||||| ||||||| ||||| ||||||||  |||||||||||||||  | ||||| ||||  || || ||||||||||||||||||||||||||    
T  34552536 ataaaggatgtagtaaattttatggggttgccctaggcagttggatttggtttta-taaaacgtaaacaa-agtaaataaaatggtttgataattggatt 34552633  T
Q  467 aaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||| |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  34552634 aaagcagatgatcaagcctttcgaatcctctattgctcaccgtgagtaatttgcctctcttctctcttaaagaaa 34552708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 394 - 536
Target Start/End: Complemental strand, 33898565 - 33898424
Alignment:
Q  394 ttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaatt 493  Q
    ||||||||  |||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  33898565 ttgccctaggcagttggatttgcttgcaataaaaagtaa-taatagaaaataaaatggtttgataattggattaaaacagatgatcaatcctttcgaatc 33898467  T
Q  494 ctctattgctcactatgagtaatttgcctctcttctctctcaa 536  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  33898466 ctctattgctcactgtgagtaatttgcctctcttctctctcaa 33898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 434 - 541
Target Start/End: Original strand, 23441201 - 23441308
Alignment:
Q  434 taacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctct 533  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23441201 taacaggaaataaaatggtttgataattggatcaaaacagatgatcaagcctttcgaattctctattgctcactgtgagtaatttgcctctcttctctct 23441300  T
Q  534 caaagaaa 541  Q
    ||||||||    
T  23441301 caaagaaa 23441308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 271 - 541
Target Start/End: Complemental strand, 6206246 - 6205975
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||||||||||||||||| || || |  ||| | ||||||||||   |||   | |||||    
T  6206246 ttgataaatatttagcaagtgtactaaaat-tatcgaagtagtaataaagttcgtatccacgagaaccgttgttaatttctacttaacaagttcgttaaa 6206148  T
Q  369 ataaaggatgtattaaatttat--gggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggatt 466  Q
    |||||||||||| |||||||    |||||||||||   |||| |||||||||  | ||||| ||||  || || ||||||||||||||||||||||||||    
T  6206147 ataaaggatgtagtaaatttgacagggttgccctaggtagttcgatttggtttta-taaaacgtaaacaa-agtaaataaaatggtttgataattggatt 6206050  T
Q  467 aaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||| |||| |||||||||||||  ||||||||||| |||||||||||||||||||||    
T  6206049 aaaacagatgatcaagccttttgaatcctctattgctcaccgtgagtaatttggctctcttctctctcaaagaaa 6205975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 422 - 541
Target Start/End: Original strand, 50196864 - 50196983
Alignment:
Q  422 ataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgctcactatgagtaatttgcc 521  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| | |||||||||||||    
T  50196864 ataaaaaataaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagactttcaaatactctattgctcaatgtgagtaatttgcc 50196963  T
Q  522 tctcttctctctcaaagaaa 541  Q
    ||||||||||||||||||||    
T  50196964 tctcttctctctcaaagaaa 50196983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 271 - 456
Target Start/End: Complemental strand, 49716736 - 49716548
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaa 368  Q
    |||||| ||| ||| |||||||||||||| ||||||||||| |||||||||||||||| || ||||  ||| | ||||||||||  ||||   | |||||    
T  49716736 ttgatagataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaa 49716637  T
Q  369 ataaaggatgtattaaattt-atgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttga 456  Q
    |||||||||||| ||||||| |||||||||||||  |||||||||||| || ||||||||||||| ||| |||||||||||||||||||    
T  49716636 ataaaggatgtagtaaattttatgggttgccctaggcagttggatttgattgcaataaaaagtaaataaaagaaaataaaatggtttga 49716548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 286 - 456
Target Start/End: Complemental strand, 49720203 - 49720030
Alignment:
Q  286 caagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaataaaggatgtatta 383  Q
    |||||||||||||| ||||||||||| |||||||||||||||| || ||||  ||| | ||||||||||  ||||   | |||||||||||| |||| ||    
T  49720203 caagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaataaagggtgtagta 49720104  T
Q  384 aattt-atgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttga 456  Q
    ||||| |||||||||||||   ||||||||||| || ||||||||||||| ||| |||||||||||||||||||    
T  49720103 aattttatgggttgccctaggtagttggatttgattgcaataaaaagtaaataaaagaaaataaaatggtttga 49720030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 13493509 - 13493452
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13493509 ttgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 13493452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 10765165 - 10765109
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10765165 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 10765109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 34066543 - 34066473
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  34066543 aagttcgtatccacagggactgtttcaatttctactcggaaaaaactttaaaataaaggatgtattaaatt 34066473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 49148096 - 49148000
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctaaacagttggatt 413  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| | |||||||||||||||||||||||| |   |||||||||  ||||||||||    
T  49148096 aagttcgtatccacagggactgtttcaatttctactcagcaaaaacgttaaaataaaggatgtattaaattcaaaagttgccctaggcagttggatt 49148000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 8435423 - 8435364
Alignment:
Q  328 cacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  8435423 cacatggactgtttcaatttctactctgcaaaagcgttaaaataaaggatgtattaaatt 8435364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 22448007 - 22448065
Alignment:
Q  328 cacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaat 386  Q
    |||| ||| ||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  22448007 cacagggactgtttcaatttctactcagcaaaaacgttaaaataaaggatgtattaaat 22448065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 22453241 - 22453299
Alignment:
Q  328 cacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaat 386  Q
    |||| ||| ||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  22453241 cacagggactgtttcaatttctactcagcaaaaacgttaaaataaaggatgtattaaat 22453299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 22456540 - 22456610
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||||| |  |||||||||||||||||||||||    
T  22456540 aagttcgtatccacagggactgtttcaatttctactcagcaaaaacgataaaataaaggatgtattaaatt 22456610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 3087667 - 3087704
Alignment:
Q  441 aaataaaatggtttgataattggattaaaacagatgat 478  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3087667 aaataaaatggtttgataattggattaaaacagatgat 3087704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 17902552 - 17902629
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgtttcaatttc 348  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||  ||||  |||||||| ||| | ||||||    
T  17902552 ttgatagatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgttccacaaggactgtattaatttc 17902629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 20981712 - 20981647
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggatt 337  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||  ||||  ||||||||||    
T  20981712 tgatagatatttggcaagtgtaccaataactatcgaagtagtaataaatatcgttccacaaggatt 20981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 541
Target Start/End: Original strand, 3087705 - 3087749
Alignment:
Q  497 tattgctcactatgagtaatttgcctctcttctctctcaaagaaa 541  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  3087705 tattgctcactgtgagtaatttggctctcttctctctcaaagaaa 3087749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 16848628 - 16848676
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||||| |||||||||||||||| | |||||||||||||||||||    
T  16848628 ttgataaataattggcaagtgtaccaataactatcgaagtagtaataaa 16848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 24200008 - 24200056
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||    
T  24200008 ttgataaaaatttggcaagtgtaccaataactatcgaagtagtaataaa 24200056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 50196715 - 50196771
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc 328  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||| || |||||    
T  50196715 tgataaatatttggcaagtgtaccaaaaactattgaagtaataataaaatttgtatc 50196771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 14546480 - 14546527
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataa 318  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  14546480 ttgataaatatttggcaagtgtatcaaaaactatcgaagaagtaataa 14546527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 16838699 - 16838746
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||||    
T  16838699 tgataaataattggcaagtgtaccaataactatcgaagtagtaataaa 16838746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 37642214 - 37642167
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||| ||||||| |||||||||||| | |||||||||||||||||||    
T  37642214 tgatagatatttgacaagtgtaccaataactatcgaagtagtaataaa 37642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 23441038 - 23441083
Alignment:
Q  270 gttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    ||||||| ||| |||||||||||||||| | |||||||||||||||    
T  23441038 gttgatagataattggcaagtgtaccaataactatcgaagtagtaa 23441083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 602
Target Start/End: Complemental strand, 34553053 - 34552984
Alignment:
Q  533 tcaaagaaaatctagtctttattcataattattcttgcttaatgtttttgttaatatcgtatgtatgact 602  Q
    |||| ||||| |||||||||||||| |||||||  |||||||||||||| |||  || || |||||||||    
T  34553053 tcaatgaaaacctagtctttattcagaattatttgtgcttaatgttttttttatgattgtttgtatgact 34552984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 17618919 - 17618979
Alignment:
Q  327 tcacaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||| ||| |||||||||||||||| | ||||| | ||||||||||| || |||||||||    
T  17618919 tcacagggactgtttcaatttctacttgacaaaaacgttaaaataaagaatatattaaatt 17618979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 23990203 - 23990251
Alignment:
Q  339 tttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    |||||||||| | | || |||||| ||||||||||||||||||||||||    
T  23990203 tttcaatttcaaattggaaaaagcgttaaaataaaggatgtattaaatt 23990251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 28918730 - 28918682
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||| ||| || ||||||||||||| | |||||||||||||||||||    
T  28918730 ttgatagataattagcaagtgtaccaataactatcgaagtagtaataaa 28918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 393 - 536
Target Start/End: Complemental strand, 92673 - 92531
Alignment:
Q  393 gttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaat 492  Q
    |||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92673 gttgccctaggcagttggatttggttgcaataaaaagtaag-aacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaat 92575  T
Q  493 tctctattgctcactatgagtaatttgcctctcttctctctcaa 536  Q
     |||||||| ||||| ||||||||||||||||||||||||||||    
T  92574 cctctattgttcactgtgagtaatttgcctctcttctctctcaa 92531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 92795 - 92751
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||    
T  92795 ttgatagataattggcaagtgtaccaataactatcgaagtagtaa 92751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 272 - 487
Target Start/End: Original strand, 33730 - 33945
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatc-acaaggattgtt-tcaatttctactcggcaaaagctttaaaa 369  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||  ||| | ||||||||||  ||||   | ||||||    
T  33730 tgatagatatttggcaagtgtaccaaaa-ctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 33828  T
Q  370 taaaggatgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagtaacagaaaataaaatggtttgataattggattaaa 469  Q
    ||||||||||| ||||||||||||||||||||  |||| | |||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  33829 taaaggatgtactaaatttatgggttgccctaggcagtcg-atttggatgcaataaaaagtaaataacagaaaataaaatggttttataattggattaaa 33927  T
Q  470 acagatgatcaagccttt 487  Q
    ||| ||||||||||||||    
T  33928 acaaatgatcaagccttt 33945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 223921 - 223857
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223921 caataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 228847 - 228783
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  228847 caataaaaagtaaataacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 228783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 420 - 503
Target Start/End: Complemental strand, 20269 - 20187
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcctttcgaattctctattgct 503  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||| ||||||||||    
T  20269 caataaaaagtaaataacagaaaataaaatggtttgataattgaattaaaacagatgattaagccatt-gaatcctctattgct 20187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 13819 - 13755
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  13819 caataaaaagtaaataacagaaaataaaatggtttgataattgaattaaaacagatgattaagcc 13755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 27835 - 27771
Alignment:
Q  420 caataaaaagtaagtaacagaaaataaaatggtttgataattggattaaaacagatgatcaagcc 484  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  27835 caataaaaagtaaataacagaaaataaaatggtttgataattgaattaaaacagatgattaagcc 27771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 7552 - 7482
Alignment:
Q  318 aagttcgtatc-acaaggattgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatt 387  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  7552 aagttcgtatccacaaggactgtttcaatttctactcggaaaaagcgttaaaataaaggatatattaaatt 7482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 376 - 532
Target Start/End: Original strand, 468329 - 468483
Alignment:
Q  376 atgtattaaatttatgggttgccctaaacagttggatttggttccaataaaaagtaagta-acagaaaataaaatggtttgataattggattaaaacaga 474  Q
    |||||| ||||||| ||||| |||||| ||||||||||||||| || ||||||||||  | | || || |||  |||| |||  ||| |||||||||| |    
T  468329 atgtataaaattta-gggttaccctaagcagttggatttggttgca-taaaaagtaaaaataaagcaattaacttggtatgaagattagattaaaacata 468426  T
Q  475 tgatcaagcctttcgaattctctattgctcactatgagtaatttgcctctcttctctc 532  Q
    |||||||||||| |||||| ||||||||||||| ||| ||||||||  ||||||||||    
T  468427 tgatcaagcctt-cgaattgtctattgctcactgtgaataatttgctcctcttctctc 468483  T

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Target: scaffold0264 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 24193 - 24232
Alignment:
Q  280 atttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaa 24232  T

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Target: scaffold0067 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 27715 - 27668
Alignment:
Q  272 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||||    
T  27715 tgataaataattggcaagtgtaccaataactatcgaagtagtaataaa 27668  T

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Target: scaffold0175 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 28430 - 28471
Alignment:
Q  278 atatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  28430 atatttggcaagtgtaccaataactatcgaagtagtaataaa 28471  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 26649 - 26690
Alignment:
Q  278 atatttggcaagtgtaccaaaagctatcgaagtagtaataaa 319  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  26649 atatttggcaagtgtaccaataactatcgaagtagtaataaa 26690  T

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Target: scaffold0084 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 29719 - 29673
Alignment:
Q  268 ttgttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||    
T  29719 ttgttgatagatttttggcaagtgtaccaaaa-ctatcgaagtagtaa 29673  T

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Target: scaffold0084; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 19637 - 19594
Alignment:
Q  271 ttgataaatatttggcaagtgtaccaaaagctatcgaagtagtaa 315  Q
    |||||| || ||||||||||||||||||| |||||||||||||||    
T  19637 ttgatagatttttggcaagtgtaccaaaa-ctatcgaagtagtaa 19594  T

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Target: scaffold1048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1048
Description:

Target: scaffold1048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 1744 - 1687
Alignment:
Q  282 ttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatcacaaggattgt 339  Q
    |||||||||||||||| | ||||||||||||||| |||  ||||  ||||||||||||    
T  1744 ttggcaagtgtaccaataactatcgaagtagtaagaaatatcgttccacaaggattgt 1687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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