View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_low_50 (Length: 274)
Name: NF17087_low_50
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 32844786 - 32844541
Alignment:
| Q |
12 |
aatacttgcaaacatacacgacgctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggc |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32844786 |
aatacttgcaaacatacacaacgctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggc |
32844687 |
T |
|
| Q |
112 |
cggtggggtgtcgtacttaggctccgatgaagacattggcgggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32844686 |
cggtggggtgtcgtacttaggctccgatgaagacattggcgggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatt |
32844587 |
T |
|
| Q |
212 |
tatcccggaccttccaccctttcttctttgcatggatgagaggagt |
257 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32844586 |
tattccggaccttccaccctttcttctttgcatggatgagaggagt |
32844541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 27745106 - 27744865
Alignment:
| Q |
12 |
aatacttgcaaacatacacgacgctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggc |
111 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | || ||| || |
|
|
| T |
27745106 |
aatacttgcaaagatacacaatgctgaaagccacaaagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagc |
27745007 |
T |
|
| Q |
112 |
cggtggggtgtcgtacttaggctccgatgaagacattggcgggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatt |
211 |
Q |
| |
|
|||||||| ||||||||||| || ||| ||||||||| || ||||||||||||||||||||| | ||||||||||||||| ||| ||| |||||| |
|
|
| T |
27745006 |
cggtggggggtcgtacttagattctgataaagacattgtcgaattgagaaactatcaacaatggactgttattggttttcaagatgagtagaggatgatt |
27744907 |
T |
|
| Q |
212 |
tatcccggaccttccaccctttcttctttgcatggatgagag |
253 |
Q |
| |
|
||| | |||||||||| || |||||||||||||| |||||| |
|
|
| T |
27744906 |
tattcttgaccttccactctctcttctttgcatggttgagag |
27744865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University