View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_52 (Length: 270)
Name: NF17087_low_52
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4006264 - 4006530
Alignment:
| Q |
1 |
tgacctgctcgaattcctacacatgttttatcgttcgatgttcgactagtaaacgttaaccaattaatccaatgtccacaatgcggtgaacatgcttctc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4006264 |
tgacctgctcgaattcctacacatgttttatctttcgatgttcgactagtaaacgttaaccaattaatccaatgtccacaatgcggtgaacatgcttctc |
4006363 |
T |
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| Q |
101 |
aaataagattatctccaattgaacgagagatgtaaattcgcagaataaagagtagaggaaaagtagtattactactaatacaaataaatatgcaatactt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4006364 |
aaataagattatctccaattgaacgagtgatgtaaatttgcagaataaagagtagaggaaaagtagtattactactaatacaaataaatatgcaatactt |
4006463 |
T |
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| Q |
201 |
catatcattgctgattttcaatctatnnnnnnntaatcacaaagagattcctcttatataacatatt |
267 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4006464 |
catatcattgctgattttcaatctataaaaaaataatcacaaagagattcctcttatataacatatt |
4006530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 4018605 - 4018650
Alignment:
| Q |
180 |
acaaataaatatgcaatacttcatatcattgctgattttcaatctat |
226 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
4018605 |
acaaataaatatgaaatact-catatcattgctgattttcaatctat |
4018650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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