View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_57 (Length: 251)
Name: NF17087_low_57
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 46958236 - 46958479
Alignment:
| Q |
1 |
cccagattattctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatctta |
100 |
Q |
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| T |
46958236 |
cccagattattctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatctta |
46958335 |
T |
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| Q |
101 |
gtcgattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaa |
200 |
Q |
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| T |
46958336 |
gtcgattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaa |
46958435 |
T |
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| Q |
201 |
cgaagatatttttgttgtgttaaactccttattcgcctttgctt |
244 |
Q |
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| T |
46958436 |
cgaagatatttttgttgtgttaaactccttattcgcctttgctt |
46958479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 46955391 - 46955593
Alignment:
| Q |
9 |
attctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtcgatta |
108 |
Q |
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| T |
46955391 |
attctcaagcaattcgcctacagtcgtttctgtactcaccacatcaactgagtttccaaagtactcttgcgggagaggtggtttgattcttgatctattg |
46955490 |
T |
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| Q |
109 |
tttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacgaagata |
208 |
Q |
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| T |
46955491 |
tttatggctaacttgcaactggttttttgatcatgttttagtcttcgtgcacaagtcacacttctccaaacaaatgccgataaagattggaaggaagata |
46955590 |
T |
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| Q |
209 |
ttt |
211 |
Q |
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| T |
46955591 |
ttt |
46955593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 46951138 - 46951298
Alignment:
| Q |
84 |
aggtggttccaatcttagtcgattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgt |
183 |
Q |
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| T |
46951138 |
aggtggtttcattctcggtcgattatttacggctaacatacaagttgttacttgatcattcgttaggtcgcgagcacgagttatacctctccaaacatgt |
46951237 |
T |
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| Q |
184 |
gctgataaagcctggaacgaagatatttttgttgtgttaaactccttattcgcctttgctt |
244 |
Q |
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| T |
46951238 |
gctgataaagattggaatgaagagattttgtttgtattagactccatattggccttagctt |
46951298 |
T |
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