View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_6 (Length: 585)

Name: NF17087_low_6
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_6
NF17087_low_6
[»] chr6 (6 HSPs)
chr6 (17-260)||(14368093-14368336)
chr6 (267-566)||(14367631-14367934)
chr6 (221-287)||(14368017-14368083)
chr6 (221-302)||(16509327-16509407)
chr6 (221-273)||(26318380-26318432)
chr6 (221-260)||(17155444-17155483)
[»] chr8 (18 HSPs)
chr8 (76-177)||(26463709-26463810)
chr8 (420-566)||(26463328-26463476)
chr8 (17-77)||(26463842-26463902)
chr8 (221-302)||(34552608-34552688)
chr8 (221-302)||(38198166-38198246)
chr8 (222-307)||(10028151-10028236)
chr8 (224-301)||(31543192-31543269)
chr8 (221-299)||(12022260-12022338)
chr8 (223-297)||(28083793-28083867)
chr8 (223-297)||(37032430-37032504)
chr8 (241-332)||(26463536-26463627)
chr8 (222-301)||(16652996-16653075)
chr8 (222-297)||(40990302-40990377)
chr8 (222-301)||(41103624-41103703)
chr8 (221-302)||(24243164-24243245)
chr8 (223-300)||(27483608-27483685)
chr8 (221-274)||(27487064-27487117)
chr8 (266-302)||(20472738-20472774)
[»] chr2 (14 HSPs)
chr2 (221-302)||(21662326-21662406)
chr2 (221-289)||(41778832-41778900)
chr2 (221-302)||(886964-887043)
chr2 (224-301)||(31086553-31086629)
chr2 (223-287)||(21745249-21745313)
chr2 (223-302)||(18811375-18811453)
chr2 (226-301)||(36347663-36347738)
chr2 (222-260)||(31795887-31795925)
chr2 (265-302)||(14187120-14187157)
chr2 (222-258)||(7681338-7681374)
chr2 (221-301)||(8426988-8427068)
chr2 (221-301)||(15224811-15224891)
chr2 (222-258)||(16565867-16565903)
chr2 (222-258)||(37740009-37740045)
[»] chr1 (16 HSPs)
chr1 (221-302)||(27739098-27739178)
chr1 (226-297)||(25541939-25542008)
chr1 (222-301)||(8529846-8529925)
chr1 (222-301)||(30010379-30010458)
chr1 (223-301)||(51597715-51597793)
chr1 (226-307)||(49832588-49832669)
chr1 (221-298)||(51303693-51303769)
chr1 (222-301)||(40095051-40095131)
chr1 (221-271)||(1085607-1085657)
chr1 (228-302)||(1089201-1089274)
chr1 (221-271)||(33643345-33643395)
chr1 (224-281)||(42742430-42742486)
chr1 (221-273)||(2506614-2506666)
chr1 (222-258)||(44211023-44211059)
chr1 (221-273)||(50079501-50079553)
chr1 (222-258)||(50744399-50744435)
[»] chr4 (17 HSPs)
chr4 (222-301)||(47433826-47433906)
chr4 (221-297)||(47694401-47694476)
chr4 (221-302)||(55510216-55510297)
chr4 (222-297)||(26166988-26167063)
chr4 (221-302)||(41227529-41227607)
chr4 (221-299)||(43961459-43961537)
chr4 (221-290)||(27735803-27735872)
chr4 (221-297)||(37711194-37711270)
chr4 (221-302)||(11842355-11842434)
chr4 (221-271)||(56135826-56135876)
chr4 (221-302)||(18516588-18516668)
chr4 (223-296)||(35248738-35248811)
chr4 (222-287)||(36151637-36151702)
chr4 (222-258)||(6891450-6891486)
chr4 (221-265)||(14539355-14539399)
chr4 (222-258)||(45132619-45132655)
chr4 (221-301)||(46007818-46007898)
[»] chr3 (10 HSPs)
chr3 (221-301)||(54996797-54996874)
chr3 (221-301)||(46204933-46205013)
chr3 (222-301)||(14898023-14898102)
chr3 (265-302)||(34579859-34579896)
chr3 (222-301)||(651778-651857)
chr3 (265-307)||(18086021-18086063)
chr3 (220-302)||(25179940-25180022)
chr3 (221-302)||(49815468-49815548)
chr3 (223-299)||(21090190-21090266)
chr3 (222-258)||(37102266-37102302)
[»] chr7 (10 HSPs)
chr7 (221-301)||(33655225-33655305)
chr7 (226-302)||(33224136-33224211)
chr7 (221-301)||(41497074-41497154)
chr7 (221-260)||(18063678-18063717)
chr7 (222-297)||(24970283-24970358)
chr7 (221-260)||(48093981-48094020)
chr7 (221-299)||(33519097-33519175)
chr7 (222-275)||(22163227-22163280)
chr7 (222-275)||(22221935-22221988)
chr7 (221-301)||(39855982-39856062)
[»] scaffold0294 (1 HSPs)
scaffold0294 (223-258)||(15353-15388)
[»] chr5 (5 HSPs)
chr5 (222-301)||(10072765-10072844)
chr5 (265-302)||(34980971-34981008)
chr5 (245-302)||(40644084-40644140)
chr5 (221-301)||(4373683-4373763)
chr5 (265-301)||(33744240-33744276)
[»] scaffold0096 (1 HSPs)
scaffold0096 (222-301)||(6631-6710)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-132; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 14368336 - 14368093
Alignment:
Q  17 atgaaagagacgattcatatgcatgttagatacctctcccaatttgagctttaatattgttctagatttgcattgtaagaagagaataaatttattttag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368336 atgaaagagacgattcatatgcatgttagatacctctcccaatttgagctttaatattgttctagatttgcattgtaagaagagaataaatttattttag 14368237  T
Q  117 aattgacattcttttgagagtactacatcctaagggtctgtttgggagaggattttggaagggttttggaggactaagattaattgattttaaatgtctg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368236 aattgacattcttttgagagtactacatcctaagggtctgtttgggagaggattttggaagggttttggaggactaagattaattgattttaaatgtctg 14368137  T
Q  217 tttgtgatcatataatacttcaaccacacttaattgattttaaa 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  14368136 tttgtgatcatataatacttcgaccacacttaattgattttaaa 14368093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 267 - 566
Target Start/End: Complemental strand, 14367934 - 14367631
Alignment:
Q  267 ttttataatgtctataatttaaaagagaaaagtaagatctctctgaaactaaaatcaacaaaccaattttannnnnnnnn--------aggaatcaagca 358  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||                  |||||||||       
T  14367934 ttttataatgtctataatttaaaagagaaaagtaagatctctccaaaactaaaatcaacaaaccaatttttttttttatttttttttgaggaatcaa--- 14367838  T
Q  359 acaaaccaatttctttcggtttaaaatgacaaattggaccaaaccaagaacaagttaatttccagtgccacttcgtctcatgtgaacaacctcagcacta 458  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14367837 -caaaccaatttctttcggtttaaaatgacaaattggaccaagccaagaacaagttaatttccagtgccacttcgtctcatgtgaacaacctcagcacta 14367739  T
Q  459 ctattttgagagttcatatttaaacctagttttttctatgcagcgttaagggtaacaagttggtctgatttaagtttgtgatggaaaataatccaaacca 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  14367738 ctattttgagagttcatatttaaacctagttttttctatgcagcgttaagggtaacaagttggtttgatttaagtttgtgatggaaaaaaatccaaacca 14367639  T
Q  559 ctagaaaa 566  Q
    ||| ||||    
T  14367638 ctaaaaaa 14367631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 14368083 - 14368017
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataattta 287  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14368083 tgatcatataatacttcgaccacacttaattgattttaaataagcattttataatgtctataattta 14368017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 16509407 - 16509327
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| ||||||| ||| ||||| || || ||||||||| ||||| ||||| |||| |||||||||||    
T  16509407 tgatcatataatacttcaatcacacttgatttatttttaa-aaacattttatagtgtctttaattcaaaaaagaaaagtaag 16509327  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 26318432 - 26318380
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttata 273  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||||    
T  26318432 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttata 26318380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 17155483 - 17155444
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaa 260  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  17155483 tgatcatataatacttaaatcacacttaattgattttaaa 17155444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 26463810 - 26463709
Alignment:
Q  76 ttctagatttgcattgtaagaagagaataaatttattttagaattgacattcttttgagagtactacatcctaagggtctgtttgggagaggattttgga 175  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  26463810 ttctagacttgcattgtaagaagagaataaatttattttagaattgacattcttttcagagtactacaacctaagggtctgtttgggaggggattttgga 26463711  T
Q  176 ag 177  Q
    ||    
T  26463710 ag 26463709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 420 - 566
Target Start/End: Complemental strand, 26463476 - 26463328
Alignment:
Q  420 ccagtgccacttcgtctcatgtgaacaacctcagcactactattttgagagttcatatttaaacctagttttttctatgcagcgttaagg--gtaacaag 517  Q
    |||||| |||||  ||| ||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||  ||| | ||    
T  26463476 ccagtggcactttctctaatgtgaacaacctaagcactacttttttcagagttcatatttaaatctagttttttctatgcagcgttaagggtgtatcgag 26463377  T
Q  518 ttggtctgatttaagtttgtgatggaaaataatccaaaccactagaaaa 566  Q
    ||||| || ||||||||| |||||| ||| ||||||||| |||| ||||    
T  26463376 ttggtttggtttaagtttttgatgggaaaaaatccaaactactacaaaa 26463328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 26463902 - 26463842
Alignment:
Q  17 atgaaagagacgattcatatgcatgttagatacctctcccaatttgagctttaatattgtt 77  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26463902 atgaaagagacgattcatatgcatgttagatacctctctcaatttgagctttaatattgtt 26463842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 34552688 - 34552608
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||||||||||||||  || ||||||| |||||||| || |||| |||| |||| |||||||||||||||||||||||    
T  34552688 tgatcatataatacttcaattacgcttaattaattttaaaaaa-cattatatagtgtcaataatttaaaagagaaaagtaag 34552608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 38198166 - 38198246
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| ||||||||||| |||||||| || || |||||| ||||| ||||||||||  ||||||||||    
T  38198166 tgatcatataatacttcaatcacacttaattcattttaaa-aaacactttatagtgtctgtaatttaaaaatgaaaagtaag 38198246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 10028236 - 10028151
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaagatctc 307  Q
    |||||||||| ||||||||||||||||||| |||||||| ||  || |||||  |||  |||||||||| |||||||||| |||||    
T  10028236 gatcatataagacttcaaccacacttaatttattttaaaaaaatatgttatatggtccgtaatttaaaaaagaaaagtaaaatctc 10028151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 31543192 - 31543269
Alignment:
Q  224 tcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||| ||||||||||| |||||| | || ||| |||||  ||| ||||||||||| ||||||||||    
T  31543192 tcatataatacttcaatcacacttaatttattttagaaaaacatgttatatggtccataatttaaaaaagaaaagtaa 31543269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 12022260 - 12022338
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 299  Q
    |||||||||||||||||||  |||||||||| |||||||| || ||||||| | ||||  |||||||||| | ||||||    
T  12022260 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgtccgtaatttaaaaaataaaagt 12022338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 28083867 - 28083793
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    ||||||||||||| ||| ||||||||||| |||||| | || ||| ||||| ||||| |||||||||| ||||||    
T  28083867 atcatataatactccaatcacacttaatttattttagagaaacatgttatattgtctgtaatttaaaaaagaaaa 28083793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 37032504 - 37032430
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    |||||||||||||| || ||||||||||| |||||||| || ||| |||||  |||| |||||||||| ||||||    
T  37032504 atcatataatactttaatcacacttaatttattttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaa 37032430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 26463627 - 26463536
Alignment:
Q  241 cacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt-aagatctctctgaaactaaaatcaacaaaccaa 332  Q
    |||||||||||||||||||| |||||||| ||  |||  ||||||||||||||||| || || | ||||  ||||| ||||||||||||||||    
T  26463627 cacacttaattgattttaaa-aagcatttcatcgtgtacataatttaaaagagaaaggtaaacacctctgcgaaaccaaaatcaacaaaccaa 26463536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 16653075 - 16652996
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| ||||||| ||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  16653075 gatcatataatacttcaatcacacttgatttattttataaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 16652996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 40990302 - 40990377
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    |||||||||||||||||| || |||||||| |||||||| || ||| |||||  |||  |||||||||| ||||||    
T  40990302 gatcatataatacttcaatcagacttaatttattttaaagaaacatgttatatagtccgtaatttaaaaaagaaaa 40990377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 41103624 - 41103703
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |  | |||||||||| ||||||||||    
T  41103624 gatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcttgtaatttaaaaaagaaaagtaa 41103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 24243164 - 24243245
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| ||||||||||| |||| ||| ||  || | ||| ||||| ||||||| || || ||||||||    
T  24243164 tgatcatataatacttcaatcacacttaattaatttgaaaaaaagatctcatattgtctgtaatttagaaaaggaaagtaag 24243245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 27483685 - 27483608
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagta 300  Q
    |||||||||||||||||  |||||| ||| |||| ||| || |||||||| || | | |||||||||| |||||||||    
T  27483685 atcatataatacttcaataacactttatttatttaaaaaaaacattttatgatatttgtaatttaaaatagaaaagta 27483608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 27487117 - 27487064
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataa 274  Q
    |||||||||||||||||||  ||||||||||| ||||| | || ||||||||||    
T  27487117 tgatcatataatacttcaataacacttaattggttttagaaaaacattttataa 27487064  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 20472774 - 20472738
Alignment:
Q  266 attttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||||||||| |||||||||| |||||||||||    
T  20472774 attttataatgtctgtaatttaaaaaagaaaagtaag 20472738  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 21662326 - 21662406
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| || ||||||||||||||||| || ||||||| | |||||||| |||||||||||||||||||    
T  21662326 tgatcatataatacttcaatcaaacttaattgattttaaa-aaacattttacagtgtctatactttaaaagagaaaagtaag 21662406  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 41778900 - 41778832
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaa 289  Q
    ||||||||||||||||||| ||||||||||| |||||||| || ||||||||| |||| ||||||||||    
T  41778900 tgatcatataatacttcaatcacacttaatttattttaaaaaaacattttatactgtccataatttaaa 41778832  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 887043 - 886964
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| ||||| ||||| |||||||| |||||||||||| ||  | |||||||||| |||||||||||    
T  887043 tgatcatataatacttcaatcacacataatttattttaaaaaagcattttatattg--tgtaatttaaaaaagaaaagtaag 886964  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 31086629 - 31086553
Alignment:
Q  224 tcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||| |||||||| |||||||| ||||||||||| || ||||||| ||| | | |||||||||||||||||||||    
T  31086629 tcatatactacttcaatcacacttagttgattttaaa-aaacattttaaaatatatgtaatttaaaagagaaaagtaa 31086553  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 21745249 - 21745313
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataattta 287  Q
    ||||||||||| |||||||||||||||||||||||| | ||  |||| ||| ||| |||||||||    
T  21745249 atcatataatagttcaaccacacttaattgattttagaaaaatatttaatagtgtttataattta 21745313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 18811453 - 18811375
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||| ||||| ||||||||||| |||||||| || || |||||| |  || |||||||||| |||||||||||    
T  18811453 atcatataatatttcaatcacacttaatttattttaaa-aaacactttatagttactgtaatttaaaaaagaaaagtaag 18811375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 36347663 - 36347738
Alignment:
Q  226 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  36347663 atataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 36347738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 31795887 - 31795925
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaa 260  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  31795887 gatcatataatacttcaatcacacttaatttattttaaa 31795925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 14187157 - 14187120
Alignment:
Q  265 cattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  14187157 cattttataatgtttataatttaaaaaagaaaagtaag 14187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 7681374 - 7681338
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  7681374 gatcatataatacttcaatcacacttaatttatttta 7681338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 8426988 - 8427068
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||||| | ||||||||| |||||| | || ||| |||||  |||| || |||||||  |||||||||    
T  8426988 tgatcatataatacttcaatcgcacttaatttattttagaaaaacatgttatatcgtctgtactttaaaaatgaaaagtaa 8427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 15224811 - 15224891
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||||| ||||||||||| ||| || | || ||| |||||  | |  |||||||||| ||||||||||    
T  15224811 tgatcatataatacttcaatcacacttaatttattctagaaaaacatgttatatagcccgtaatttaaaaaagaaaagtaa 15224891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 16565903 - 16565867
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  16565903 gatcatataatacttcaatcacacttaatttatttta 16565867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 37740009 - 37740045
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  37740009 gatcatataatacttcaatcacacttaatttatttta 37740045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 27739178 - 27739098
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||  |||||||||| |||||||||||||||||||| || ||||||||| | | ||||||||||||||||||||||||    
T  27739178 tgatcattaaatacttcaatcacacttaattgattttaaa-aaacattttatagtatttataatttaaaagagaaaagtaag 27739098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 25542008 - 25541939
Alignment:
Q  226 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    |||||| ||| |||||||||||||||||||||||| |   |||||||| |||||||||||||||||||||||    
T  25542008 atataacactccaaccacacttaattgattttaaaaat--attttatagtgtctataatttaaaagagaaaa 25541939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 8529925 - 8529846
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| ||||||||||| |||| ||| || ||| |||||  || | |||||||||| ||||||||||    
T  8529925 gatcatataatacttcaatcacacttaatttatttaaaaaaaacatgttatatagtttgtaatttaaaaaagaaaagtaa 8529846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 30010458 - 30010379
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||||||||||||||| |||||| | || ||| |||||  |||  |||||||||  ||||||||||    
T  30010458 gatcatataatacttcaaccacacttaatttattttagaaaaacatgttatatagtccgtaatttaaacaagaaaagtaa 30010379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 51597793 - 51597715
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||| ||||||||||| |||||||| || ||| |||||  |||  | |||||||| ||||||||||    
T  51597793 atcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtgatttaaaaaagaaaagtaa 51597715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 49832669 - 49832588
Alignment:
Q  226 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaagatctc 307  Q
    |||||||||||||| |||||||| || ||||| || || || |||||| | ||| |||||||||| ||||||||||| ||||    
T  49832669 atataatacttcaatcacacttattttatttttaaaaaacactttatattatctgtaatttaaaaaagaaaagtaagctctc 49832588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 51303693 - 51303769
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaag 298  Q
    ||||||||||||| ||||| ||||||||||||| |||||| || ||||||||| |||  ||||||| ||| |||||||    
T  51303693 tgatcatataatagttcaatcacacttaattga-tttaaaaaaacattttatagtgttcataattttaaaaagaaaag 51303769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 40095051 - 40095131
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta-aataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| ||||||||||| |||||| || || ||| |||||  |||| ||||||||||  |||||||||    
T  40095051 gatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatatagtctgtaatttaaaaacgaaaagtaa 40095131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 1085607 - 1085657
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcatttta 271  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  1085607 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacatttta 1085657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 1089274 - 1089201
Alignment:
Q  228 ataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||| || ||||||| ||||||| |||| || ||||||||| || || |||| |||||||||||||||||    
T  1089274 ataatactttaaacacacttgattgattctaaaaaa-cattttatagtggctttaatctaaaagagaaaagtaag 1089201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 33643395 - 33643345
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcatttta 271  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  33643395 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacatttta 33643345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 42742430 - 42742486
Alignment:
Q  224 tcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctat 281  Q
    ||||||| |||||||| ||||||||||| |||||||| || ||||||||| |||||||    
T  42742430 tcatatagtacttcaatcacacttaatttattttaaa-aaacattttatagtgtctat 42742486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 2506666 - 2506614
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttata 273  Q
    |||||||||||||||||||  |||||||||| ||||| || || |||||||||    
T  2506666 tgatcatataatacttcaaaaacacttaatttattttgaaaaaacattttata 2506614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 44211023 - 44211059
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  44211023 gatcatataatacttcaatcacacttaatttatttta 44211059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 50079501 - 50079553
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttata 273  Q
    |||||||||||||||| ||  |||||||||| |||||||| || |||||||||    
T  50079501 tgatcatataatactttaaaaacacttaatttattttaaaaaaacattttata 50079553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 50744399 - 50744435
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  50744399 gatcatataatacttcaatcacacttaatttatttta 50744435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 47433826 - 47433906
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataat-gtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| ||||||||||| |||||||| || ||| |||| || |||| |||||||||| ||||||||||    
T  47433826 gatcatataatacttcaatcacacttaatttattttaaaaaaacatgttattatagtctgtaatttaaaaaagaaaagtaa 47433906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 47694476 - 47694401
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    ||||||||||||||||||||| ||||| |||||||||| | |||||||| ||| ||||  |||||||||||||||||    
T  47694476 tgatcatataatacttcaaccgcacttgattgattttaga-aagcatttcatagtgtccgtaatttaaaagagaaaa 47694401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 55510297 - 55510216
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||  ||||||||||| |||||||| || ||||||| | ||||| ||| ||||||  ||||||||||    
T  55510297 tgatcatataatacttcagtcacacttaatttattttaaaaaaacattttacattgtctttaaattaaaaatgaaaagtaag 55510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 26167063 - 26166988
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||| |||||||||| ||||||    
T  26167063 gatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtctgtaatttaaaaaagaaaa 26166988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 41227607 - 41227529
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| |||||||||||  |||||||| | ||||||||| |||  ||||||||||| ||| |||||||    
T  41227607 tgatcatataatacttcaatcacacttaatt--ttttaaatga-cattttatattgttcataatttaaaaaagagaagtaag 41227529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 43961537 - 43961459
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 299  Q
    |||||||||||||||||||  |||||||||| |||||||| || ||||||| | |||  ||||||||||| | ||||||    
T  43961537 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcataatttaaaaaataaaagt 43961459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 27735872 - 27735803
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaa 290  Q
    ||||||||||||||||||| ||||||||||| |||||||| || ||| |||||  |||  ||||||||||    
T  27735872 tgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaa 27735803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 37711270 - 37711194
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    ||||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||    
T  37711270 tgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaaagaaaa 37711194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 11842434 - 11842355
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| || |||||||| ||||  || ||  |||||||| ||||| |||||| ||| |||||||||||    
T  11842434 tgatcatataatacttcaatcagacttaattcattt--aaaaaatattttatagtgtctgtaatttgaaaaagaaaagtaag 11842355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 56135876 - 56135826
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcatttta 271  Q
    |||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  56135876 tgatcatataatacttcaaaaacacttaatttattttaaaaaaacatttta 56135826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 18516588 - 18516668
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||| ||||| |||||| ||||||||||| |||||  | || ||||||||| |||  ||||||||||| |||||||||||    
T  18516588 tgatcacataatgcttcaatcacacttaattcattttttaaaaacattttatagtgttcataatttaaaa-agaaaagtaag 18516668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 35248811 - 35248738
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaa 296  Q
    ||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| |||||    
T  35248811 atcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaa 35248738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 36151702 - 36151637
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataattta 287  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||  |||| |||||||    
T  36151702 gatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtctgtaattta 36151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 6891486 - 6891450
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  6891486 gatcatataatacttcaatcacacttaatttatttta 6891450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 14539399 - 14539355
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagc 265  Q
    |||||||||||||||||||  |||||||||| |||||||| ||||    
T  14539399 tgatcatataatacttcaaaaacacttaatttattttaaaaaagc 14539355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 45132619 - 45132655
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  45132619 gatcatataatacttcaatcacacttaatttatttta 45132655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 46007818 - 46007898
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||||| | ||||||||| |||||| | || ||  |||||  ||||  ||||||||| ||||||||||    
T  46007818 tgatcatataatacttcaatctcacttaatttattttacaaaaacaagttatatagtctgcaatttaaaaaagaaaagtaa 46007898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 54996797 - 54996874
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||||||  ||| |||||||||| ||||||||||    
T  54996797 tgatcatataatacttcaatcacacttcattcatttt-aataaacattttataa--tctgtaatttaaaaaagaaaagtaa 54996874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 46205013 - 46204933
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||||| ||||||||||| |||||| | || ||| |||||  ||  ||||||||||| ||||||||||    
T  46205013 tgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaa 46204933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 14898102 - 14898023
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| | |||  |||| |||||||||| ||||||||||    
T  14898102 gatcatataatacttcaatcacacttaatttattttagaaaaacatgtcatatagtctgtaatttaaaaaagaaaagtaa 14898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 34579896 - 34579859
Alignment:
Q  265 cattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34579896 cattttataatgtctataatttaaaagagaaaaataag 34579859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 651857 - 651778
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||| ||||||| || || ||||||||||| |||||| | || ||| |||||  ||||||||||||||| ||||||||||    
T  651857 gatcgtataatattttaatcacacttaatttattttagaaaaacatgttatatagtctataatttaaaaaagaaaagtaa 651778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 18086063 - 18086021
Alignment:
Q  265 cattttataatgtctataatttaaaagagaaaagtaagatctc 307  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||    
T  18086063 cattttataatgtctgtaatttaaaaaagaaaagtaagctctc 18086021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 25180022 - 25179940
Alignment:
Q  220 gtgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||||||||| ||||| ||||||||| | ||||  ||  | ||||||||| |||| |||||||||||  ||||||||||    
T  25180022 gtgatcatataatatttcaatcacacttaaattatttccaaagaacattttatagtgtccataatttaaaaatgaaaagtaag 25179940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 49815548 - 49815468
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    ||||||||||||||||||| ||| ||||||| ||||| || || ||||||||| |   | |||||||||| |||||||||||    
T  49815548 tgatcatataatacttcaatcacgcttaatttatttttaa-aaacattttatagtacttgtaatttaaaaaagaaaagtaag 49815468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 21090190 - 21090266
Alignment:
Q  223 atcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 299  Q
    |||||||||||||||||  |||||||||| |||||||| ||  |||||| | |||  ||||||||||| | ||||||    
T  21090190 atcatataatacttcaaaaacacttaatttattttaaaaaaatattttacattgttcataatttaaaaaataaaagt 21090266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 37102266 - 37102302
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta 258  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  37102266 gatcatataatacttcaaccacacttgatttatttta 37102302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 33655225 - 33655305
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||||||||| ||||||||||| |||||| | || ||| |||||  | | ||||||||||| ||||||||||    
T  33655225 tgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcccataatttaaaaaagaaaagtaa 33655305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 33224211 - 33224136
Alignment:
Q  226 atataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||||||||| |||| |||||||| |||||| ||  |||||||| |||| | |||| ||||||||||||||||    
T  33224211 atataatacttcaaacacatttaattga-tttaaaaaaatattttatagtgtcaaaaattaaaaagagaaaagtaag 33224136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 41497074 - 41497154
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||| |||||| ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  41497074 tgatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 41497154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 18063678 - 18063717
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaa 260  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  18063678 tgatcatataatacttcaatcacacttaatttattttaaa 18063717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 24970283 - 24970358
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaa 297  Q
    |||||||||||||||||| ||||||||||| |||||| | || ||| |||||   || ||||||||||| ||||||    
T  24970283 gatcatataatacttcaatcacacttaatttattttagaaaaacatgttatataatccataatttaaaaaagaaaa 24970358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 48094020 - 48093981
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaa 260  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  48094020 tgatcatataatactttaaccacacttaatttattttaaa 48093981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 33519175 - 33519097
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagt 299  Q
    |||||||||||||||||||  |||||||||| |||| ||| || ||||||||| |||   |||||||||| | ||||||    
T  33519175 tgatcatataatacttcaaaaacacttaatttatttcaaaaaaacattttatattgttcgtaatttaaaaaataaaagt 33519097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 22163227 - 22163280
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataat 275  Q
    |||||||||||||||||| ||||||||||| |||||| | || |||| ||||||    
T  22163227 gatcatataatacttcaatcacacttaatttattttagaaaaacattatataat 22163280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 22221935 - 22221988
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataat 275  Q
    |||||||||||||||||| ||||||||||| |||||| | || |||| ||||||    
T  22221935 gatcatataatacttcaatcacacttaatttattttagaaaaacattatataat 22221988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 39855982 - 39856062
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||| |  ||||||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  39855982 tgatcatataatacttaagtcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 39856062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 15388 - 15353
Alignment:
Q  223 atcatataatacttcaaccacacttaattgatttta 258  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15388 atcatataatacttcaaccacacttaatttatttta 15353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 10072765 - 10072844
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| || |||||||| |||||| | || ||| |||||  |||  |||||||||| ||||||||||    
T  10072765 gatcatataatacttcaatcatacttaatttattttagaaaaacatgttataccgtcggtaatttaaaaaagaaaagtaa 10072844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 34980971 - 34981008
Alignment:
Q  265 cattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  34980971 cattttataatgtccataatttaaaaaagaaaagtaag 34981008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 40644084 - 40644140
Alignment:
Q  245 cttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaag 302  Q
    |||||||||||||||| ||| |||||||| ||||  ||||| ||||||||||||||||    
T  40644084 cttaattgattttaaaaaag-attttatagtgtccgtaattcaaaagagaaaagtaag 40644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 4373683 - 4373763
Alignment:
Q  221 tgatcatataatacttcaaccacacttaattgattttaaataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    ||||||||||||| ||||| ||||||||||| ||||| || || | | |||||  |||  |||||||||| ||||||||||    
T  4373683 tgatcatataatatttcaatcacacttaatttatttttaaaaaacttgttatatagtccgtaatttaaaaaagaaaagtaa 4373763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 33744276 - 33744240
Alignment:
Q  265 cattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  33744276 cattttataatgtccataatttaaaaaagaaaagtaa 33744240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 6710 - 6631
Alignment:
Q  222 gatcatataatacttcaaccacacttaattgatttta-aataagcattttataatgtctataatttaaaagagaaaagtaa 301  Q
    |||||||||||||||||| |||||| |||| |||||| ||||| ||  |||||  |||| |||||||||| ||||||||||    
T  6710 gatcatataatacttcaatcacactaaatttattttagaataa-caagttatatagtctgtaatttaaaaaagaaaagtaa 6631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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