View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_69 (Length: 233)

Name: NF17087_low_69
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_69
NF17087_low_69
[»] chr2 (4 HSPs)
chr2 (1-215)||(43943498-43943714)
chr2 (1-89)||(41181370-41181462)
chr2 (3-57)||(45475409-45475463)
chr2 (17-49)||(8268813-8268845)
[»] chr3 (6 HSPs)
chr3 (1-88)||(7247908-7247999)
chr3 (1-88)||(2432991-2433082)
chr3 (1-88)||(41579772-41579863)
chr3 (3-57)||(28611150-28611204)
chr3 (17-58)||(42807664-42807705)
chr3 (17-49)||(7843081-7843113)
[»] chr5 (6 HSPs)
chr5 (3-116)||(18538385-18538502)
chr5 (17-88)||(20200212-20200287)
chr5 (1-88)||(18310069-18310160)
chr5 (1-88)||(20192287-20192378)
chr5 (3-61)||(33995198-33995256)
chr5 (1-88)||(3603196-3603287)
[»] chr1 (10 HSPs)
chr1 (17-65)||(25040140-25040188)
chr1 (1-88)||(6437587-6437678)
chr1 (1-88)||(46141716-46141807)
chr1 (17-85)||(13173773-13173845)
chr1 (3-85)||(46973141-46973227)
chr1 (23-61)||(4515991-4516029)
chr1 (3-61)||(41804083-41804141)
chr1 (17-88)||(49927577-49927652)
chr1 (8-61)||(35521579-35521632)
chr1 (17-61)||(36908543-36908587)
[»] chr7 (4 HSPs)
chr7 (1-88)||(48314608-48314698)
chr7 (6-88)||(34622433-34622519)
chr7 (20-61)||(36185801-36185842)
chr7 (17-61)||(46860476-46860520)
[»] chr4 (3 HSPs)
chr4 (3-85)||(4768615-4768701)
chr4 (1-85)||(29700350-29700438)
chr4 (1-88)||(49572948-49573039)
[»] chr8 (4 HSPs)
chr8 (1-88)||(18438568-18438659)
chr8 (1-88)||(18441489-18441580)
chr8 (6-49)||(35966802-35966845)
chr8 (3-57)||(22577634-22577688)
[»] chr6 (3 HSPs)
chr6 (1-87)||(13404680-13404770)
chr6 (1-61)||(12784005-12784065)
chr6 (3-88)||(25141129-25141218)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43943714 - 43943498
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggctgcaatgtgtcaacaacaattctccacttaatttgg 100  Q
    |||| ||||||||  ||||||||||| ||||||  ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43943714 tattaaattcctcgagagttaactgctgagggggaaaaatcgtattttatttgtgtgcttcagctgcaatgtgtcaacaacaattctccacttaatttgg 43943615  T
Q  101 gtcggagagagtaatag--nnnnnnnncttcggagagagtaatagnnnnnnnaataagacagtattatcactaacgtaaatttcttagcctcttaaaaaa 198  Q
    |||||||||||||||||          ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43943614 gtcggagagagtaatagttttttttttcttcggagagagtaatagtttttttaataagacagtattatcactaacgtaaatttcttagcctcttaaaaaa 43943515  T
Q  199 ttgtctattgattcatt 215  Q
    |||||||||||||||||    
T  43943514 ttgtctattgattcatt 43943498  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 41181462 - 41181370
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctcc 89  Q
    ||||||||||||| | ||||||||||||||||| |||||  |||||||| | ||||||||| ||    ||||||||||||||| |||||||||    
T  41181462 tattgaattcctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctcc 41181370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 45475463 - 45475409
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 57  Q
    ||||||| ||| | ||||||||||||||||| |||||| |||||||| |||||||    
T  45475463 ttgaatttctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtg 45475409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 8268813 - 8268845
Alignment:
Q  17 agttaactgccgaggggacaaaattgtatttta 49  Q
    |||||||||||||||||||||||| ||||||||    
T  8268813 agttaactgccgaggggacaaaatcgtatttta 8268845  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7247908 - 7247999
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    ||||||||||||| | ||||||||||||||||| |||||  |||||||||| ||||||||| ||    | ||||||||||||||||||||||    
T  7247908 tattgaattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaacaacaattctc 7247999  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2432991 - 2433082
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||||||   |||||||||||||||||| ||||  |||||||| | ||||||||| ||    ||||||||||||||||||||||||    
T  2432991 tattgaattcctcgacagttaactgccgaggggataaaagcgtattttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 2433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41579772 - 41579863
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    ||||||||||||| | | |||||||||||||||  ||||| |||||||| || |||||||| ||    ||||| ||||||||||||||||||    
T  41579772 tattgaattcctcagcaattaactgccgagggggaaaaatcgtattttacttatgtgcctcagccttatgcaacgtgtcaacaacaattctc 41579863  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 28611150 - 28611204
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 57  Q
    ||||||| ||| | ||||||||||||||||| ||||||| ||||||| |||||||    
T  28611150 ttgaatttctcggcagttaactgccgagggggcaaaattatattttacttgtgtg 28611204  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 42807664 - 42807705
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgc 58  Q
    ||||||||||||||| | ||||| ||||||||||||||||||    
T  42807664 agttaactgccgaggaggcaaaaatgtattttatttgtgtgc 42807705  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 7843081 - 7843113
Alignment:
Q  17 agttaactgccgaggggacaaaattgtatttta 49  Q
    |||||||||||||||||| ||||||||||||||    
T  7843081 agttaactgccgaggggataaaattgtatttta 7843113  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 18538385 - 18538502
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctccacttaattt 98  Q
    |||||||||||   | ||||||||||||||| |||||| |||||||| ||||||||||| ||    || |||||||||||||||||| |||||||| |||    
T  18538385 ttgaattcctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcctaatgaaatgtgtcaacaacaattttccacttatttt 18538484  T
Q  99 gggtcggagagagtaata 116  Q
     || ||||  ||||||||    
T  18538485 tggacggaaggagtaata 18538502  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 20200212 - 20200287
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||| ||    ||||||||||||||||||||||||    
T  20200212 agttaactgccgatggggcaaaaacgtattttatttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 20200287  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18310069 - 18310160
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||||||   |||||||||| |||| | |||||  |||||||| ||||||||||| ||    ||||||||||||||||||||||||    
T  18310069 tattgaattcctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 18310160  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20192378 - 20192287
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||| || | ||||||||| ||| ||| |||||| |||||||| ||||||||||| ||    || |||||||||||||||||||||    
T  20192378 tattgaattcttcagcagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattctc 20192287  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 33995198 - 33995256
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    ||||||| ||| | ||||||||| |||||||| |||||||||||||| |||||||||||    
T  33995198 ttgaatttctcggcagttaactgtcgaggggataaaattgtattttacttgtgtgcctc 33995256  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3603196 - 3603287
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||| || | ||||||||| ||||||  |||||  |||||||| || |||||||| ||    ||||||||||||||||||||||||    
T  3603196 tattgaattcttcggcagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgtcaacaacaattctc 3603287  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 25040140 - 25040188
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgcctcggct 65  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  25040140 agttaactgccgaagggacaaaattgtattttacttgtgtgcctcggct 25040188  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6437587 - 6437678
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||| |||||| | |||||||||||||| || |||||  |||||||| ||||||||||| ||    ||||||||||||||||||||||||    
T  6437587 tattgacttcctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaacaacaattctc 6437678  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 46141807 - 46141716
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    ||||||||||||| | |||||||||||||| || |||||| |||||||| |||||| |||| ||    |||||| |||||||||||||||||    
T  46141807 tattgaattcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttatgcaatatgtcaacaacaattctc 46141716  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 13173845 - 13173773
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaatt 85  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||| ||    || ||||||||||||||||||    
T  13173845 agttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaatt 13173773  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 46973227 - 46973141
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaatt 85  Q
    ||||||||||| | ||||||||||| ||||| |||||| |||||||| ||||||| ||| ||    || ||||||||||||||||||    
T  46973227 ttgaattcctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaaatgtgtcaacaacaatt 46973141  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 4516029 - 4515991
Alignment:
Q  23 ctgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  4516029 ctgccgaggggacaaaatcgtattttacttgtgtgcctc 4515991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 41804083 - 41804141
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    ||||||||||| | ||||||||||||| ||| |||||  |||||||| |||||||||||    
T  41804083 ttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctc 41804141  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 49927577 - 49927652
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||||||||||||||||  |||||||| | ||||  ||||||    || |||||||||||||||||||||    
T  49927577 agttaactgccgaggggacaaaaacgtattttactcgtgtttctcggccatatgaaatgtgtcaacaacaattctc 49927652  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 35521632 - 35521579
Alignment:
Q  8 ttcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    |||||| | |||||||||||||| || |||||| |||||||| |||||||||||    
T  35521632 ttcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctc 35521579  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 36908587 - 36908543
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    ||||||||||||||| | ||||| ||||||||| |||||||||||    
T  36908587 agttaactgccgaggaggcaaaaatgtattttacttgtgtgcctc 36908543  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 48314698 - 48314608
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    ||||||||||||| | ||||||||||||||||| ||||| ||||||||| |||||| ||||  |    ||||||||||||||||||||||||    
T  48314698 tattgaattcctcggcagttaactgccgagggg-caaaaatgtattttacttgtgtacctcaaccttatgcaatgtgtcaacaacaattctc 48314608  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 34622519 - 34622433
Alignment:
Q  6 aattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||| ||||||||| | ||||| |||||  |||  ||| ||||||||||| ||    ||||||||||||||||||||||||    
T  34622519 aattcctctgcagttaactgtcaagggggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 34622433  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36185842 - 36185801
Alignment:
Q  20 taactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    |||||||||||||| |||||| |||||||| |||||||||||    
T  36185842 taactgccgagggggcaaaatcgtattttacttgtgtgcctc 36185801  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 46860520 - 46860476
Alignment:
Q  17 agttaactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    ||||||||||||||||| |||||  |||||||| |||||||||||    
T  46860520 agttaactgccgagggggcaaaagcgtattttacttgtgtgcctc 46860476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 4768701 - 4768615
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaatt 85  Q
    ||||||||||| | ||||||||||||||||| ||||||| ||||||| |||||||| || ||    || ||||||||||||||||||    
T  4768701 ttgaattcctcggcagttaactgccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgtcaacaacaatt 4768615  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29700350 - 29700438
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaatt 85  Q
    ||||||||||||| | ||||||||| ||||| |||||||  |||||||| ||||||||||| ||    || ||||||||||||||||||    
T  29700350 tattgaattcctcagcagttaactgtcgaggagacaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaatt 29700438  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 49572948 - 49573039
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||||||   ||||||||| ||| ||| |||||  |||||||| ||||||||||| ||    ||||||||||||||||| ||||||    
T  49572948 tattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacgattctc 49573039  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18438659 - 18438568
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||||||   ||||||||||||| ||| |||||  |||||||| |||||||| || ||    ||||||||||||||||||||||||    
T  18438659 tattgaattcctcaacagttaactgccgaaggggcaaaagcgtattttacttgtgtgcatcagccttatgcaatgtgtcaacaacaattctc 18438568  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18441489 - 18441580
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    ||||||||| ||| | ||||||||||||||||| |||||  |||||||| ||||||| ||| ||    || |||||||||||||||||||||    
T  18441489 tattgaatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacaattctc 18441580  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 35966802 - 35966845
Alignment:
Q  6 aattcctctggagttaactgccgaggggacaaaattgtatttta 49  Q
    |||||||| | ||||||||||||||||| |||||||||||||||    
T  35966802 aattcctcggcagttaactgccgagggggcaaaattgtatttta 35966845  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 22577688 - 22577634
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtg 57  Q
    ||||||||||| | | |||||||||||||| ||||||  ||||||||||||||||    
T  22577688 ttgaattcctcagcaattaactgccgagggaacaaaaacgtattttatttgtgtg 22577634  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13404680 - 13404770
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattct 87  Q
    |||||||||||||   |||||||| |||||||| ||||   |||||||| ||||||||||||||    |||||||||| ||||||||||||    
T  13404680 tattgaattcctcgacagttaactaccgagggggcaaacgcgtattttacttgtgtgcctcggccttatgcaatgtgttaacaacaattct 13404770  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12784005 - 12784065
Alignment:
Q  1 tattgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctc 61  Q
    |||||||||| || | ||||||||||||| ||| |||||  |||||||| |||||||||||    
T  12784005 tattgaattcatcggcagttaactgccgatggggcaaaagcgtattttacttgtgtgcctc 12784065  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 25141129 - 25141218
Alignment:
Q  3 ttgaattcctctggagttaactgccgaggggacaaaattgtattttatttgtgtgcctcggc----tgcaatgtgtcaacaacaattctc 88  Q
    |||||||||||   |||||||||||||  |||||||| | ||  ||||| ||||||||| ||    ||||||||||||||||||||||||    
T  25141129 ttgaattcctcgacagttaactgccgaatggacaaaaatataaattattcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 25141218  T

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