View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_low_7 (Length: 580)
Name: NF17087_low_7
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_7 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Complemental strand, 17535809 - 17535247
Alignment:
| Q |
18 |
caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaatgaaagaaaatgaaagtttgaatgagtactttaatagactcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17535809 |
caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaatgaaagaaaatgaaagtttgaattagtactttaatagactcac |
17535710 |
T |
|
| Q |
118 |
tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattgaaaaatatgatcatatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
17535709 |
tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaatttgtttgattgaaaaatatgatcctatg |
17535610 |
T |
|
| Q |
218 |
gtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaaggttatcacgacgcaatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17535609 |
gtggctgttatagaagaaactaaggatctatcaaccatgattgtccaagggctgatggggtcacttagatcctatgagcaaaggttatcacgacgcaatg |
17535510 |
T |
|
| Q |
318 |
aaaagtcagttgaaagtgcctttcaatccaagctcaccattcaaccaaataatgagaaaatgatgtcccaaaataatggtgagtcttctagaggtggcag |
417 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17535509 |
aaaagtcagttgaaagtgcgtttcagtccaagctcaccattcaaccaaataatgagaaaatgatgtcccaaaataatggtgagtcttctagaggtggtat |
17535410 |
T |
|
| Q |
418 |
attttctagaggccgaggaagaggcggaaactctcgtggaaaaggaagaggcacctatggaggacgaggacattttggaggctcaaataaatggtgtggc |
517 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17535409 |
attttctagaggccgtggaagaggcggaaactctcgtggaagaggaagaggcacctatggaggacgaggacattttggaggctcaaataaatggtgtggc |
17535310 |
T |
|
| Q |
518 |
atctgtaagaagaacactcatgaagagaaagattgctggaacaaaggcaagccacaatgtcat |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
17535309 |
atctgtaagaagaacactcatgaagagaaagattgttggatcaaaggtaagccacaatgtcat |
17535247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 360
Target Start/End: Original strand, 26407375 - 26407634
Alignment:
| Q |
101 |
tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg |
200 |
Q |
| |
|
||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || ||||||| | |
|
|
| T |
26407375 |
tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag |
26407474 |
T |
|
| Q |
201 |
aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag |
300 |
Q |
| |
|
|| || ||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| | |||||||| |||||||| |
|
|
| T |
26407475 |
caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag |
26407574 |
T |
|
| Q |
301 |
gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca |
360 |
Q |
| |
|
| | | ||||| |||||| ||| |||| |||||||||||||| || |||| |||||| |
|
|
| T |
26407575 |
gatgttacgacattctgaaaaatcaattgagagtgcctttcaatctaaactcaacattca |
26407634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 26407675 - 26407736
Alignment:
| Q |
395 |
ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg |
456 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| |
|
|
| T |
26407675 |
ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg |
26407736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 38252 - 37961
Alignment:
| Q |
18 |
caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaatgaaagaaaatgaaagtttgaatgagtactttaatagactcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38252 |
caaaggtgagaacagtcaaacttatgtctcttaaaagagattttgagaacgaaaaaat-aaagaaaatgaaagtttgaatgagtactttaatagactcgc |
38154 |
T |
|
| Q |
118 |
tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattgaaaaatatgatcatatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
38153 |
tgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagcttgattgaaaaatatgatcctatg |
38054 |
T |
|
| Q |
218 |
gtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaaggttatcacga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38053 |
gtggctgttatagaagaaactaaggatctatcaaccatgactttccaagggctgatggggtcacttagatcatatgagcaaaggttatcacga |
37961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 360
Target Start/End: Complemental strand, 27209664 - 27209405
Alignment:
| Q |
101 |
tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg |
200 |
Q |
| |
|
||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || ||||||| | |
|
|
| T |
27209664 |
tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag |
27209565 |
T |
|
| Q |
201 |
aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag |
300 |
Q |
| |
|
|| || ||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| | |||||||| |||||||| |
|
|
| T |
27209564 |
caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag |
27209465 |
T |
|
| Q |
301 |
gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca |
360 |
Q |
| |
|
| | | ||||| |||||| ||| |||| |||||||||||||| || |||| |||||| |
|
|
| T |
27209464 |
gatgttacgacattctgaaaaatcaattgagagtgcctttcaatctaaactcaacattca |
27209405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 360
Target Start/End: Complemental strand, 26901251 - 26900992
Alignment:
| Q |
101 |
tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg |
200 |
Q |
| |
|
||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || ||||||| | |
|
|
| T |
26901251 |
tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag |
26901152 |
T |
|
| Q |
201 |
aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag |
300 |
Q |
| |
|
|| || ||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| | |||||||| |||||||| |
|
|
| T |
26901151 |
caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag |
26901052 |
T |
|
| Q |
301 |
gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca |
360 |
Q |
| |
|
| | | ||||| |||||| ||| |||| |||||||||||||| || |||| |||||| |
|
|
| T |
26901051 |
gatgttacgacattctgaaaaatcaattgagagtgcctttcaatctaaactcaacattca |
26900992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 26900951 - 26900890
Alignment:
| Q |
395 |
ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg |
456 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| |
|
|
| T |
26900951 |
ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg |
26900890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 360
Target Start/End: Original strand, 23675489 - 23675748
Alignment:
| Q |
101 |
tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg |
200 |
Q |
| |
|
||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || ||||||| | |
|
|
| T |
23675489 |
tacttcaacagactctccgagttggtgaatcagatgaagtcgcatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag |
23675588 |
T |
|
| Q |
201 |
aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag |
300 |
Q |
| |
|
|| || ||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| | |||||||| |||||||| |
|
|
| T |
23675589 |
caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag |
23675688 |
T |
|
| Q |
301 |
gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca |
360 |
Q |
| |
|
| | | ||||| |||||| ||| |||| |||||||||||||| || |||| |||||| |
|
|
| T |
23675689 |
gatgttacgacattctgaaaaatcaattgagagtgcctttcaatcgaaactcaacattca |
23675748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 360
Target Start/End: Original strand, 24047765 - 24048024
Alignment:
| Q |
101 |
tactttaatagactcactgatttggtgaaccaaatgaaatctcatggagatacaattgaagatcgtagaattgttgataaaattttaattagtttgattg |
200 |
Q |
| |
|
||||| || |||||| | || |||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||| |||||| | || ||||||| | |
|
|
| T |
24047765 |
tacttcaacagactctccgagttggtgaatcagatgaagtcacatggtgatacgatagaagatcgcagaattgttgacaaaattctgatcagtttgacag |
24047864 |
T |
|
| Q |
201 |
aaaaatatgatcatatggtggctgttatagaagaaactaaggatctatcaaccatgactgtccaagggctgatggggtcacttagatcctatgagcaaag |
300 |
Q |
| |
|
|| || ||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| | |||||||| |||||||| |
|
|
| T |
24047865 |
caagatttgacccaatggtgggtgtgatagaagaaaccaaggatctatcaaccttgactattcaagggttgatggggtctttgagatcctacgagcaaag |
24047964 |
T |
|
| Q |
301 |
gttatcacgacgcaatgaaaagtcagttgaaagtgcctttcaatccaagctcaccattca |
360 |
Q |
| |
|
| | | ||||| |||||| ||| |||| |||||||||||||| || |||| |||||| |
|
|
| T |
24047965 |
gatgttacgacattctgaaaaatcaattgagagtgcctttcaatcgaaactcaacattca |
24048024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 23675789 - 23675850
Alignment:
| Q |
395 |
ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg |
456 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| |
|
|
| T |
23675789 |
ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg |
23675850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 24048065 - 24048126
Alignment:
| Q |
395 |
ggtgagtcttctagaggtggcagattttctagaggccgaggaagaggcggaaactctcgtgg |
456 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| |
|
|
| T |
24048065 |
ggtgagtcttctagaggtggcagatttggaagaggcagaggcagaggtcgaaactcacgtgg |
24048126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University