View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_70 (Length: 229)
Name: NF17087_low_70
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 33628489 - 33628296
Alignment:
| Q |
19 |
aacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcc |
118 |
Q |
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| T |
33628489 |
aacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcc |
33628390 |
T |
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| Q |
119 |
tttagtctccggc-nnnnnnntataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataac |
211 |
Q |
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| T |
33628389 |
tttagtctccggcaaaaaaaatataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataac |
33628296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 33610004 - 33609811
Alignment:
| Q |
19 |
aacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcc |
118 |
Q |
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| T |
33610004 |
aacttcatggatgattttcttgacgatcttctcctttaacaaatcgacaccaaaaccaatgtttttcccatatggtgtacattgaatccaaaggaattcc |
33609905 |
T |
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| Q |
119 |
tttagtctccggc-nnnnnnntataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataac |
211 |
Q |
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| T |
33609904 |
tttagtctcaggcaagaaaaatataataaaaagagtcatcacagcaacccaaccagcatagaacaagaaggctccaaacttaaagtgacataac |
33609811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 33589376 - 33589297
Alignment:
| Q |
48 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctc |
127 |
Q |
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| T |
33589376 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctc |
33589297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 33596548 - 33596469
Alignment:
| Q |
48 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctc |
127 |
Q |
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| T |
33596548 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctc |
33596469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 33619260 - 33619093
Alignment:
| Q |
45 |
tcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnt-ataa |
143 |
Q |
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|||| |||||||||| ||||| |||||||||| ||| | |||||||| ||| |||||| ||||||| ||||||||| ||||| ||| |||| |
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| T |
33619260 |
tcttgtcctttaacataccgagaccaaaaccagtgtctgccccatatagtgtacattgactccaaaggaattcctttggtctcaggcaagaagaagataa |
33619161 |
T |
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| Q |
144 |
tgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataac |
211 |
Q |
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| T |
33619160 |
caaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataac |
33619093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 33603681 - 33603600
Alignment:
| Q |
46 |
cttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctc |
127 |
Q |
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| T |
33603681 |
cttctactttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctc |
33603600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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