View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_72 (Length: 222)
Name: NF17087_low_72
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_72 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 2151569 - 2151439
Alignment:
| Q |
16 |
tcaacaatggcataacaatgttcaagttcaattaatacacaagataataaatcagtagggccaagtgactatgactaggcctttatttggatttgcgtt- |
114 |
Q |
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| T |
2151569 |
tcaacaaagggataacaatgttcaagttcaattaatagacaagataataaatcagtagggccaagtgactatgactaggcctttatttggatttgcgttg |
2151470 |
T |
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| Q |
115 |
ggtagaaaatctagtgtccaaatatagaata |
145 |
Q |
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| T |
2151469 |
ggtagaaaatctagtgtccaaatatagaata |
2151439 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 2151442 - 2151404
Alignment:
| Q |
184 |
aataccaaaataatttcatcggcaattaattgccgatga |
222 |
Q |
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|||||||||||||||||||| ||||||||||| |||||| |
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| T |
2151442 |
aataccaaaataatttcatcagcaattaattgtcgatga |
2151404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 44686272 - 44686313
Alignment:
| Q |
181 |
taaaataccaaaataatttcatcggcaattaattgccgatga |
222 |
Q |
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| T |
44686272 |
taaaataccaaaataatttcatcgacagttaactgccgatga |
44686313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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