View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17087_low_74 (Length: 221)
Name: NF17087_low_74
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_74 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 50121667 - 50121852
Alignment:
| Q |
18 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50121667 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgt |
50121766 |
T |
|
| Q |
118 |
gcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50121767 |
gcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatat |
50121852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 50112086 - 50112270
Alignment:
| Q |
18 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
50112086 |
gaagtaaaaatcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatgt |
50112185 |
T |
|
| Q |
118 |
gcataaggttttccac---cataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctg |
199 |
Q |
| |
|
|||| ||| || |||| ||| |||||| |||||||||||||||||||| || ||||||| ||||| ||||| ||||| |||| |
|
|
| T |
50112186 |
gcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctg |
50112270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 23931122 - 23930935
Alignment:
| Q |
13 |
gagatgaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacac |
112 |
Q |
| |
|
|||| |||||||||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| |||||||| || | |||| |
|
|
| T |
23931122 |
gagaagaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacag |
23931023 |
T |
|
| Q |
113 |
catgtgcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctga |
200 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| |||||||| || | |||||| |||||||||||||||| ||| || ||||||||||| |
|
|
| T |
23931022 |
catgtgcagaagcttttccaccattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctga |
23930935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University